Difference between revisions of "OXALODECARB-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-315 CPD-315] == * smiles: ** CC4(=C(C)C=C3(N2(C%12(OC(CO)C(OP(=O)(O[CH](C)CNC(=O)CCC1(C)(C(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** malate dehydrog...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-315 CPD-315] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OXALODECARB-RXN OXALODECARB-RXN] ==
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* smiles:
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* direction:
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** CC4(=C(C)C=C3(N2(C%12(OC(CO)C(OP(=O)(O[CH](C)CNC(=O)CCC1(C)(C(CC(=O)N)[CH]%11(C8(C)(C(CC(=O)N)(C)C(CCC(=O)N)C7(C(C)=C%10(C(CC(=O)N)(C)C(CCC(=O)N)C9(C=C6(C(C)(C)C(CCC(=O)N)C5(C(C)=C1N([Co---]([N+](=C2)C3=C4)(C#N)([N+]=56)([N+]=78)[N+]=9%10)%11)))))))))[O-])C(O)%12))))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=RMRCNWBMXRMIRW-WZHZPDAFSA-L
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* common name:
 
* common name:
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** cyanocob(III)alamin
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** malate dehydrogenase (decarboxylating) (NAD+)
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* molecular weight:
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* ec number:
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** 1355.377   
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** [http://enzyme.expasy.org/EC/1.1.1.38 EC-1.1.1.38]
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** [http://enzyme.expasy.org/EC/4.1.1.3 EC-4.1.1.3]
 
* Synonym(s):
 
* Synonym(s):
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** cyanocobalamin
 
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** rubramin
 
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** vitamin B12
 
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** alphamine
 
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** crystamine
 
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** cyanoject
 
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** cyomin
 
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** cytamen
 
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** hydrobexan
 
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** rubesol
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[TransportSeed_CPD-315]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[PROTON]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
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* [[TransportSeed_CPD-315]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 H+[c] '''+''' 1 oxaloacetate[c] '''=>''' 1 CO2[c] '''+''' 1 pyruvate[c]
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* [[ExchangeSeed_CPD-315]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-07_002070]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-01_003680]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-07_002060]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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== Pathways  ==
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* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation: [http://metacyc.org/META/NEW-IMAGE?object=METHYLGALLATE-DEGRADATION-PWY METHYLGALLATE-DEGRADATION-PWY]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6339]], syringate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6339 PWY-6339]
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** '''1''' reactions found over '''11''' reactions in the full pathway
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* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway): [http://metacyc.org/META/NEW-IMAGE?object=P184-PWY P184-PWY]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 68-19-9
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* RHEA:
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* DRUGBANK : DB00115
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15641 15641]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=70678590 70678590]
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** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
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* HMDB : HMDB00607
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P13187 P13187]
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** [http://www.genome.jp/dbget-bin/www_bget?C02823 C02823]
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** [http://www.uniprot.org/uniprot/P13155 P13155]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P13156 P13156]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17439 17439]
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** [http://www.uniprot.org/uniprot/Q58628 Q58628]
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{{#set: smiles=CC4(=C(C)C=C3(N2(C%12(OC(CO)C(OP(=O)(O[CH](C)CNC(=O)CCC1(C)(C(CC(=O)N)[CH]%11(C8(C)(C(CC(=O)N)(C)C(CCC(=O)N)C7(C(C)=C%10(C(CC(=O)N)(C)C(CCC(=O)N)C9(C=C6(C(C)(C)C(CCC(=O)N)C5(C(C)=C1N([Co---]([N+](=C2)C3=C4)(C#N)([N+]=56)([N+]=78)[N+]=9%10)%11)))))))))[O-])C(O)%12))))}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: inchi key=InChIKey=RMRCNWBMXRMIRW-WZHZPDAFSA-L}}
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{{#set: common name=malate dehydrogenase (decarboxylating) (NAD+)}}
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{{#set: common name=cyanocob(III)alamin}}
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{{#set: ec number=EC-1.1.1.38}}
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{{#set: molecular weight=1355.377    }}
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{{#set: ec number=EC-4.1.1.3}}
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{{#set: common name=cyanocobalamin|rubramin|vitamin B12|alphamine|crystamine|cyanoject|cyomin|cytamen|hydrobexan|rubesol}}
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{{#set: gene associated=Ec-07_002070|Ec-01_003680|Ec-07_002060}}
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{{#set: consumed by=TransportSeed_CPD-315}}
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{{#set: in pathway=METHYLGALLATE-DEGRADATION-PWY|PWY-6339|P184-PWY}}
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{{#set: produced by=TransportSeed_CPD-315}}
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{{#set: reconstruction category=annotation}}
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{{#set: reversible reaction associated=ExchangeSeed_CPD-315}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:39, 21 March 2018

Reaction OXALODECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • malate dehydrogenase (decarboxylating) (NAD+)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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