Difference between revisions of "PHENYLALANINE--TRNA-LIGASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-1905 CPD0-1905] == * smiles: ** C(OP(=O)([O-])OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(CC(O)1)N3...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
 
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD0-1905 CPD0-1905] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHENYLALANINE--TRNA-LIGASE-RXN PHENYLALANINE--TRNA-LIGASE-RXN] ==
−
* smiles:
+
* direction:
−
** C(OP(=O)([O-])OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(CC(O)1)N3(C(=O)NC2(C(=O)NC(N)=NC=23)))
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=BUZOGVVQWCXXDP-VPENINKCSA-J
+
 
* common name:
 
* common name:
−
** 8-oxo-dGTP
+
** Phenylalanine--tRNA ligase
−
* molecular weight:
+
** tRNA-binding arm
−
** 519.151   
+
** phenylalanine-tRNA ligase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.20 EC-6.1.1.20]
 
* Synonym(s):
 
* Synonym(s):
−
** 8-oxo-7,8-dihydro-2'-dGTP
 
−
** 8-oxo-7,8-dihydro-2'-deoxyguanosine 5'-triphosphate
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[RXN-11410]]
+
** 1 [[ATP]][c] '''+''' 1 [[PHE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PHE-tRNAs]][c] '''=>''' 1 [[Charged-PHE-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
−
* [[RXN-14205]]
+
** 1 ATP[c] '''+''' 1 L-phenylalanine[c] '''+''' 1 H+[c] '''+''' 1 a tRNAphe[c] '''=>''' 1 an L-phenylalanyl-[tRNAphe][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-15_003330]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-06_008260]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-02_005310]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-27_001900]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=44237341 44237341]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19413 19413]
−
* CHEBI:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=77896 77896]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03660 R03660]
−
{{#set: smiles=C(OP(=O)([O-])OP(=O)([O-])OP(=O)([O-])[O-])C1(OC(CC(O)1)N3(C(=O)NC2(C(=O)NC(N)=NC=23)))}}
+
* UNIPROT:
−
{{#set: inchi key=InChIKey=BUZOGVVQWCXXDP-VPENINKCSA-J}}
+
** [http://www.uniprot.org/uniprot/P94283 P94283]
−
{{#set: common name=8-oxo-dGTP}}
+
** [http://www.uniprot.org/uniprot/Q9ZDB4 Q9ZDB4]
−
{{#set: molecular weight=519.151    }}
+
** [http://www.uniprot.org/uniprot/Q9WZS9 Q9WZS9]
−
{{#set: common name=8-oxo-7,8-dihydro-2'-dGTP|8-oxo-7,8-dihydro-2'-deoxyguanosine 5'-triphosphate}}
+
** [http://www.uniprot.org/uniprot/Q9PP34 Q9PP34]
−
{{#set: produced by=RXN-11410}}
+
** [http://www.uniprot.org/uniprot/P56145 P56145]
−
{{#set: reversible reaction associated=RXN-14205}}
+
** [http://www.uniprot.org/uniprot/O67620 O67620]
 +
** [http://www.uniprot.org/uniprot/O73984 O73984]
 +
** [http://www.uniprot.org/uniprot/Q9Z6R6 Q9Z6R6]
 +
** [http://www.uniprot.org/uniprot/Q58508 Q58508]
 +
** [http://www.uniprot.org/uniprot/P56146 P56146]
 +
** [http://www.uniprot.org/uniprot/O27545 O27545]
 +
** [http://www.uniprot.org/uniprot/O26837 O26837]
 +
** [http://www.uniprot.org/uniprot/O58391 O58391]
 +
** [http://www.uniprot.org/uniprot/O83938 O83938]
 +
** [http://www.uniprot.org/uniprot/P47436 P47436]
 +
** [http://www.uniprot.org/uniprot/O67087 O67087]
 +
** [http://www.uniprot.org/uniprot/O83059 O83059]
 +
** [http://www.uniprot.org/uniprot/O84843 O84843]
 +
** [http://www.uniprot.org/uniprot/Q9UYX3 Q9UYX3]
 +
** [http://www.uniprot.org/uniprot/Q9Z7W0 Q9Z7W0]
 +
** [http://www.uniprot.org/uniprot/Q9PJR8 Q9PJR8]
 +
** [http://www.uniprot.org/uniprot/P47437 P47437]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF9 Q9ZKF9]
 +
** [http://www.uniprot.org/uniprot/Q9UYX2 Q9UYX2]
 +
** [http://www.uniprot.org/uniprot/Q9ZKF8 Q9ZKF8]
 +
** [http://www.uniprot.org/uniprot/Q9JR76 Q9JR76]
 +
** [http://www.uniprot.org/uniprot/Q57911 Q57911]
 +
** [http://www.uniprot.org/uniprot/P43819 P43819]
 +
** [http://www.uniprot.org/uniprot/P94282 P94282]
 +
** [http://www.uniprot.org/uniprot/O84481 O84481]
 +
** [http://www.uniprot.org/uniprot/Q9ZDB5 Q9ZDB5]
 +
** [http://www.uniprot.org/uniprot/Q9WZS8 Q9WZS8]
 +
** [http://www.uniprot.org/uniprot/Q9RRX8 Q9RRX8]
 +
** [http://www.uniprot.org/uniprot/Q9PP35 Q9PP35]
 +
** [http://www.uniprot.org/uniprot/P43820 P43820]
 +
** [http://www.uniprot.org/uniprot/Q46107 Q46107]
 +
** [http://www.uniprot.org/uniprot/P15434 P15434]
 +
** [http://www.uniprot.org/uniprot/Q5SGX1 Q5SGX1]
 +
** [http://www.uniprot.org/uniprot/P37984 P37984]
 +
** [http://www.uniprot.org/uniprot/P51346 P51346]
 +
** [http://www.uniprot.org/uniprot/P75563 P75563]
 +
** [http://www.uniprot.org/uniprot/P75564 P75564]
 +
** [http://www.uniprot.org/uniprot/Q55187 Q55187]
 +
** [http://www.uniprot.org/uniprot/P95960 P95960]
 +
** [http://www.uniprot.org/uniprot/P95961 P95961]
 +
** [http://www.uniprot.org/uniprot/Q49032 Q49032]
 +
** [http://www.uniprot.org/uniprot/P08312 P08312]
 +
** [http://www.uniprot.org/uniprot/P07395 P07395]
 +
** [http://www.uniprot.org/uniprot/O42870 O42870]
 +
** [http://www.uniprot.org/uniprot/O13432 O13432]
 +
** [http://www.uniprot.org/uniprot/Q9GYS8 Q9GYS8]
 +
** [http://www.uniprot.org/uniprot/O42849 O42849]
 +
** [http://www.uniprot.org/uniprot/P17921 P17921]
 +
** [http://www.uniprot.org/uniprot/P17922 P17922]
 +
** [http://www.uniprot.org/uniprot/P15625 P15625]
 +
** [http://www.uniprot.org/uniprot/P08425 P08425]
 +
** [http://www.uniprot.org/uniprot/P15624 P15624]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Phenylalanine--tRNA ligase}}
 +
{{#set: common name=tRNA-binding arm}}
 +
{{#set: common name=phenylalanine-tRNA ligase}}
 +
{{#set: ec number=EC-6.1.1.20}}
 +
{{#set: gene associated=Ec-15_003330|Ec-06_008260|Ec-02_005310|Ec-27_001900}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:40, 21 March 2018

Reaction PHENYLALANINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phenylalanine--tRNA ligase
    • tRNA-binding arm
    • phenylalanine-tRNA ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 L-phenylalanine[c] + 1 H+[c] + 1 a tRNAphe[c] => 1 an L-phenylalanyl-[tRNAphe][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PHENYLALANINE--TRNA-LIGASE-RXN&oldid=28588"