Difference between revisions of "Ec-03 001890"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERILEU-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN] == * direction: ** REVERSI...")
(Created page with "Category:Gene == Gene Ec-03_001890 == * left end position: ** 2261618 * transcription direction: ** POSITIVE * right end position: ** 2286955 * centisome position: ** 34.6...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERILEU-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN] ==
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== Gene Ec-03_001890 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 2261618
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* common name:
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* transcription direction:
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** branched-chain-amino-acid transaminase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42]
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** 2286955
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* centisome position:
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** 34.641376   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0011_0185
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** Esi0011_0185
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** PYC
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[ILE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[2-KETO-3-METHYL-VALERATE]][c]
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* With common name(s):
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** 1 2-oxoglutarate[c] '''+''' 1 L-isoleucine[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 (S)-3-methyl-2-oxopentanoate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-20_001390]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-12_005520]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
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* Gene: [[Ec-12_005560]]
 
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** Source: [[annotation-esiliculosus_genome]]
 
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*** Assignment: GO-TERM
 
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* Gene: [[Ec-01_007170]]
 
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** Source: [[orthology-aragem]]
 
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* Gene: [[Ec-12_005530]]
 
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** Source: [[annotation-esiliculosus_genome]]
 
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*** Assignment: GO-TERM
 
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== Pathways  ==
 
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* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
 
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** '''7''' reactions found over '''7''' reactions in the full pathway
 
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* [[ILEUDEG-PWY]], L-isoleucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ILEUDEG-PWY ILEUDEG-PWY]
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-5108]], L-isoleucine biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5108 PWY-5108]
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
 
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** '''4''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-5101]], L-isoleucine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5101 PWY-5101]
 
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** '''4''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-5078]], L-isoleucine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5078 PWY-5078]
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-5104]], L-isoleucine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104]
 
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** '''3''' reactions found over '''6''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* Category: [[orthology]]
 
 
** Source: [[orthology-aragem]]
 
** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Reaction: [[PYRUVATE-CARBOXYLASE-RXN]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[P42-PWY]]
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* [[PWY-7388]]
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* [[PWY-5789]]
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* [[PWY-5743]]
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* [[PWY-6146]]
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* [[PWY-5744]]
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* [[PWY-6142]]
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* [[PWY66-399]]
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* [[PWY-6722]]
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* [[PWY-6679]]
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* [[PWY-5750]]
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* [[PWY-4381]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2261618}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24801 24801]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2286955}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02199 R02199]
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{{#set: centisome position=34.641376    }}
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* UNIPROT:
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{{#set: common name=Esi_0011_0185|Esi0011_0185|PYC}}
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
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{{#set: reaction associated=ACETYL-COA-CARBOXYLTRANSFER-RXN|PYRUVATE-CARBOXYLASE-RXN}}
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** [http://www.uniprot.org/uniprot/P38891 P38891]
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{{#set: pathway associated=P42-PWY|PWY-7388|PWY-5789|PWY-5743|PWY-6146|PWY-5744|PWY-6142|PWY66-399|PWY-6722|PWY-6679|PWY-5750|PWY-4381}}
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** [http://www.uniprot.org/uniprot/P47176 P47176]
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** [http://www.uniprot.org/uniprot/O86505 O86505]
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** [http://www.uniprot.org/uniprot/O14370 O14370]
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** [http://www.uniprot.org/uniprot/O32954 O32954]
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** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=branched-chain-amino-acid transaminase}}
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{{#set: ec number=EC-2.6.1.42}}
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{{#set: gene associated=Ec-20_001390|Ec-12_005520|Ec-12_005560|Ec-01_007170|Ec-12_005530}}
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{{#set: in pathway=ILEUSYN-PWY|ILEUDEG-PWY|PWY-5108|PWY-5103|PWY-5101|PWY-5078|PWY-5104}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:40, 21 March 2018

Gene Ec-03_001890

  • left end position:
    • 2261618
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2286955
  • centisome position:
    • 34.641376
  • Synonym(s):
    • Esi_0011_0185
    • Esi0011_0185
    • PYC

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-03_001890&oldid=28644"