Difference between revisions of "RXN-115"
From metabolic_network
(Created page with "Category:Gene == Gene Ec-03_001890 == * left end position: ** 2261618 * transcription direction: ** POSITIVE * right end position: ** 2286955 * centisome position: ** 34.6...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-115 RXN-115] == * direction: ** LEFT-TO-RIGHT * common name: ** Non-haem dioxygenase N-terminal...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-115 RXN-115] == |
| − | * | + | * direction: |
| − | + | ** LEFT-TO-RIGHT | |
| − | + | * common name: | |
| − | ** | + | ** Non-haem dioxygenase N-terminal domain |
| − | * | + | * ec number: |
| − | ** | + | ** [http://enzyme.expasy.org/EC/1.14.11.13 EC-1.14.11.13] |
| − | * | + | |
| − | ** | + | |
* Synonym(s): | * Synonym(s): | ||
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| − | == | + | == Reaction Formula == |
| − | * | + | * With identifiers: |
| + | ** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-139]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''=>''' 1 [[SUC]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-204]][c] | ||
| + | * With common name(s): | ||
| + | ** 1 oxygen[c] '''+''' 1 gibberellin A1[c] '''+''' 1 2-oxoglutarate[c] '''=>''' 1 succinate[c] '''+''' 1 CO2[c] '''+''' 1 gibberellin A8[c] | ||
| + | |||
| + | == Genes associated with this reaction == | ||
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Ec-08_003510]] | ||
| + | ** Source: [[orthology-aragem]] | ||
| + | * Gene: [[Ec-19_002760]] | ||
| + | ** Source: [[orthology-aragem]] | ||
| + | * Gene: [[Ec-19_002750]] | ||
| + | ** Source: [[annotation-esiliculosus_genome]] | ||
| + | *** Assignment: EC-NUMBER | ||
** Source: [[orthology-aragem]] | ** Source: [[orthology-aragem]] | ||
| + | == Pathways == | ||
| + | * [[PWY-102]], gibberellin inactivation I (2β-hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-102 PWY-102] | ||
| + | ** '''4''' reactions found over '''11''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
** Source: [[orthology-aragem]] | ** Source: [[orthology-aragem]] | ||
| − | * | + | *** Tool: [[pantograph]] |
| + | * Category: [[annotation]] | ||
** Source: [[annotation-esiliculosus_genome]] | ** Source: [[annotation-esiliculosus_genome]] | ||
| − | *** | + | *** Tool: [[pathwaytools]] |
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| − | + | ||
| − | + | ||
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== External links == | == External links == | ||
| − | {{#set: | + | * RHEA: |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15005 15005] |
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03008 R03008] |
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: | + | {{#set: common name=Non-haem dioxygenase N-terminal domain}} |
| − | {{#set: | + | {{#set: ec number=EC-1.14.11.13}} |
| + | {{#set: gene associated=Ec-08_003510|Ec-19_002760|Ec-19_002750}} | ||
| + | {{#set: in pathway=PWY-102}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 20:41, 21 March 2018
Contents
Reaction RXN-115
- direction:
- LEFT-TO-RIGHT
- common name:
- Non-haem dioxygenase N-terminal domain
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 OXYGEN-MOLECULE[c] + 1 CPD1F-139[c] + 1 2-KETOGLUTARATE[c] => 1 SUC[c] + 1 CARBON-DIOXIDE[c] + 1 CPD-204[c]
- With common name(s):
- 1 oxygen[c] + 1 gibberellin A1[c] + 1 2-oxoglutarate[c] => 1 succinate[c] + 1 CO2[c] + 1 gibberellin A8[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Ec-08_003510
- Source: orthology-aragem
- Gene: Ec-19_002760
- Source: orthology-aragem
- Gene: Ec-19_002750
- Source: annotation-esiliculosus_genome
- Assignment: EC-NUMBER
- Source: orthology-aragem
- Source: annotation-esiliculosus_genome
Pathways
- PWY-102, gibberellin inactivation I (2β-hydroxylation): PWY-102
- 4 reactions found over 11 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-aragem
- Tool: pantograph
- Source: orthology-aragem
- Category: annotation
- Source: annotation-esiliculosus_genome
- Tool: pathwaytools
- Source: annotation-esiliculosus_genome
External links
