Difference between revisions of "CDPREDUCT-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_CPD-315 TransportSeed_CPD-315] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Rea...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPREDUCT-RXN CDPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonucleoside-diph...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed_CPD-315 TransportSeed_CPD-315] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CDPREDUCT-RXN CDPREDUCT-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** Ribonucleoside-diphosphate reductase small chain
 +
** ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
 +
** EsV-1-128
 +
** EsV-1-180
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[CPD-315]][e] '''=>''' 1.0 [[CPD-315]][c]
+
** 1 [[Red-Thioredoxin]][c] '''+''' 1 [[CDP]][c] '''=>''' 1 [[DCDP]][c] '''+''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 cyanocob(III)alamin[e] '''=>''' 1.0 cyanocob(III)alamin[c]
+
** 1 a reduced thioredoxin[c] '''+''' 1 CDP[c] '''=>''' 1 dCDP[c] '''+''' 1 an oxidized thioredoxin[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-19_000440]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-06_005120]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-06_005570]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-21_002920]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-17_003700]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-11_002170]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-11_002180]]
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 +
** '''14''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
+
* Category: [[orthology]]
−
** Source: [[manual-import_from_medium]]
+
** Source: [[orthology-aragem]]
−
*** Comment: [[added to manage seeds from extracellular to cytosol compartment]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28038 28038]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02024 R02024]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: in pathway=}}
+
{{#set: common name=Ribonucleoside-diphosphate reductase small chain}}
−
{{#set: reconstruction category=manual}}
+
{{#set: common name=ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor}}
−
{{#set: reconstruction source=manual-import_from_medium}}
+
{{#set: common name=EsV-1-128}}
−
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
+
{{#set: common name=EsV-1-180}}
 +
{{#set: ec number=EC-1.17.4.1}}
 +
{{#set: gene associated=Ec-19_000440|Ec-06_005120|Ec-06_005570|Ec-21_002920|Ec-17_003700|Ec-11_002170|Ec-11_002180}}
 +
{{#set: in pathway=PWY-7210|PWY-7198|PWY-6545|PWY0-166|PWY-7184}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:43, 21 March 2018

Reaction CDPREDUCT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribonucleoside-diphosphate reductase small chain
    • ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
    • EsV-1-128
    • EsV-1-180
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a reduced thioredoxin[c] + 1 CDP[c] => 1 dCDP[c] + 1 an oxidized thioredoxin[c] + 1 H2O[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7210, pyrimidine deoxyribonucleotides biosynthesis from CTP: PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198, pyrimidine deoxyribonucleotides de novo biosynthesis IV: PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6545, pyrimidine deoxyribonucleotides de novo biosynthesis III: PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY0-166, superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): PWY0-166
    • 14 reactions found over 17 reactions in the full pathway
  • PWY-7184, pyrimidine deoxyribonucleotides de novo biosynthesis I: PWY-7184
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






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