Difference between revisions of "RXN0-5398"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Adenylate kinase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5398 RXN0-5398] == * direction: ** REVERSIBLE * common name: ** Pseudouridine-5'-phosphate gly...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENYL-KIN-RXN ADENYL-KIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5398 RXN0-5398] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Adenylate kinase family protein
+
** Pseudouridine-5'-phosphate glycosidase
−
** adenylate kinase
+
−
** Adenylate kinase/UMP-CMP kinase
+
−
** UMP-CMP kinase
+
−
** Alpha-D-phosphohexomutase, C-terminal
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.4.3 EC-2.7.4.3]
+
** [http://enzyme.expasy.org/EC/4.2.1.70 EC-4.2.1.70]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[AMP]][c] '''=>''' 2 [[ADP]][c]
+
** 1 [[URACIL]][c] '''+''' 1 [[CPD-15317]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[PSEUDOURIDINE-5-P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 AMP[c] '''=>''' 2 ADP[c]
+
** 1 uracil[c] '''+''' 1 D-ribofuranose 5-phosphate[c] '''<=>''' 1 H2O[c] '''+''' 1 pseudouridine 5'-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-12_005110]]
+
* Gene: [[Ec-04_005090]]
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
** Source: [[orthology-aragem]]
+
−
* Gene: [[Ec-16_004100]]
+
−
** Source: [[orthology-aragem]]
+
−
* Gene: [[Ec-07_003680]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Ec-00_009240]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: GO-TERM
+
−
* Gene: [[Ec-01_006380]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
** Source: [[orthology-aragem]]
+
−
* Gene: [[Ec-14_004920]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Ec-15_000120]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Ec-06_003080]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-16_005090]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
+
* [[PWY-6019]], pseudouridine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6019 PWY-6019]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
Line 61: Line 29:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12973 12973]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18337 18337]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00127 R00127]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01055 R01055]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05081 P05081]
+
** [http://www.uniprot.org/uniprot/Q9JWF1 Q9JWF1]
−
** [http://www.uniprot.org/uniprot/P20425 P20425]
+
** [http://www.uniprot.org/uniprot/Q9JTX5 Q9JTX5]
−
** [http://www.uniprot.org/uniprot/P08166 P08166]
+
** [http://www.uniprot.org/uniprot/Q9PPJ9 Q9PPJ9]
−
** [http://www.uniprot.org/uniprot/P38372 P38372]
+
** [http://www.uniprot.org/uniprot/Q9CGH0 Q9CGH0]
−
** [http://www.uniprot.org/uniprot/O27699 O27699]
+
** [http://www.uniprot.org/uniprot/Q9CI80 Q9CI80]
−
** [http://www.uniprot.org/uniprot/O29581 O29581]
+
** [http://www.uniprot.org/uniprot/Q9JX44 Q9JX44]
−
** [http://www.uniprot.org/uniprot/O59443 O59443]
+
** [http://www.uniprot.org/uniprot/Q9V1A5 Q9V1A5]
−
** [http://www.uniprot.org/uniprot/Q9YDD2 Q9YDD2]
+
** [http://www.uniprot.org/uniprot/Q9PP96 Q9PP96]
−
** [http://www.uniprot.org/uniprot/Q9UZN1 Q9UZN1]
+
** [http://www.uniprot.org/uniprot/Q9PN18 Q9PN18]
−
** [http://www.uniprot.org/uniprot/P58117 P58117]
+
** [http://www.uniprot.org/uniprot/Q9PJ89 Q9PJ89]
−
** [http://www.uniprot.org/uniprot/Q9PHM8 Q9PHM8]
+
** [http://www.uniprot.org/uniprot/Q9PNJ2 Q9PNJ2]
−
** [http://www.uniprot.org/uniprot/P54819 P54819]
+
** [http://www.uniprot.org/uniprot/Q9PLW9 Q9PLW9]
−
** [http://www.uniprot.org/uniprot/O66490 O66490]
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/Q9V1V9 Q9V1V9]
+
{{#set: common name=Pseudouridine-5'-phosphate glycosidase}}
−
** [http://www.uniprot.org/uniprot/P49973 P49973]
+
{{#set: ec number=EC-4.2.1.70}}
−
** [http://www.uniprot.org/uniprot/P24323 P24323]
+
{{#set: gene associated=Ec-04_005090}}
−
** [http://www.uniprot.org/uniprot/P47417 P47417]
+
{{#set: in pathway=PWY-6019}}
−
** [http://www.uniprot.org/uniprot/Q9HPA7 Q9HPA7]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P29410 P29410]
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
** [http://www.uniprot.org/uniprot/P16304 P16304]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P00570 P00570]
+
−
** [http://www.uniprot.org/uniprot/P27142 P27142]
+
−
** [http://www.uniprot.org/uniprot/P07170 P07170]
+
−
** [http://www.uniprot.org/uniprot/P12115 P12115]
+
−
** [http://www.uniprot.org/uniprot/P69441 P69441]
+
−
** [http://www.uniprot.org/uniprot/P00568 P00568]
+
−
** [http://www.uniprot.org/uniprot/P10772 P10772]
+
−
** [http://www.uniprot.org/uniprot/P00571 P00571]
+
−
** [http://www.uniprot.org/uniprot/P00569 P00569]
+
−
** [http://www.uniprot.org/uniprot/P10251 P10251]
+
−
** [http://www.uniprot.org/uniprot/P43417 P43417]
+
−
** [http://www.uniprot.org/uniprot/P49974 P49974]
+
−
** [http://www.uniprot.org/uniprot/P33107 P33107]
+
−
** [http://www.uniprot.org/uniprot/P27143 P27143]
+
−
** [http://www.uniprot.org/uniprot/P26364 P26364]
+
−
** [http://www.uniprot.org/uniprot/P33075 P33075]
+
−
** [http://www.uniprot.org/uniprot/P35140 P35140]
+
−
** [http://www.uniprot.org/uniprot/P35141 P35141]
+
−
** [http://www.uniprot.org/uniprot/P39068 P39068]
+
−
** [http://www.uniprot.org/uniprot/P34346 P34346]
+
−
** [http://www.uniprot.org/uniprot/P43188 P43188]
+
−
** [http://www.uniprot.org/uniprot/P69344 P69344]
+
−
** [http://www.uniprot.org/uniprot/P0A0U6 P0A0U6]
+
−
** [http://www.uniprot.org/uniprot/P49979 P49979]
+
−
** [http://www.uniprot.org/uniprot/Q50299 Q50299]
+
−
** [http://www.uniprot.org/uniprot/P43412 P43412]
+
−
** [http://www.uniprot.org/uniprot/P72641 P72641]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=Adenylate kinase family protein}}
+
−
{{#set: common name=adenylate kinase}}
+
−
{{#set: common name=Adenylate kinase/UMP-CMP kinase}}
+
−
{{#set: common name=UMP-CMP kinase}}
+
−
{{#set: common name=Alpha-D-phosphohexomutase, C-terminal}}
+
−
{{#set: ec number=EC-2.7.4.3}}
+
−
{{#set: gene associated=Ec-12_005110|Ec-16_004100|Ec-07_003680|Ec-00_009240|Ec-01_006380|Ec-14_004920|Ec-15_000120|Ec-06_003080|Ec-16_005090}}
+
−
{{#set: in pathway=PWY-7219}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 19:44, 21 March 2018

Reaction RXN0-5398

  • direction:
    • REVERSIBLE
  • common name:
    • Pseudouridine-5'-phosphate glycosidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 uracil[c] + 1 D-ribofuranose 5-phosphate[c] <=> 1 H2O[c] + 1 pseudouridine 5'-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6019, pseudouridine degradation: PWY-6019
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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