Difference between revisions of "AGMATIN-RXN"

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(Created page with "Category:Gene == Gene Ec-27_004630 == * left end position: ** 4089266 * transcription direction: ** NEGATIVE * right end position: ** 4093212 * centisome position: ** 63.4...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** agmatinase, partial **...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-27_004630 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] ==
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* left end position:
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* direction:
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** 4089266
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** agmatinase, partial
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* right end position:
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** Ureohydrolase
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** 4093212
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/3.5.3.11 EC-3.5.3.11]
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** 63.400387   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0000_0340
 
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** Esi0000_0340
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[DIHYDROFOLATEREDUCT-RXN]]
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* With identifiers:
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** 1 [[WATER]][c] '''+''' 1 [[AGMATHINE]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 agmatine[c] '''=>''' 1 putrescine[c] '''+''' 1 urea[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-17_004300]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-22_003700]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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* Gene: [[Ec-17_004310]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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*** Assignment: EC-NUMBER
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* Reaction: [[THYMIDYLATESYN-RXN]]
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== Pathways  ==
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* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-823 PWY0-823]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-40]], putrescine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-40 PWY-40]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: go-term
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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* [[PWY-7210]]
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* [[PWY-7198]]
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* [[PWY-7199]]
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* [[PWY-3841]]
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* [[1CMET2-PWY]]
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* [[PWY-7187]]
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* [[PWY0-166]]
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* [[PWY-7184]]
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* [[PWY-6614]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=4089266}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
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{{#set: right end position=4093212}}
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* LIGAND-RXN:
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{{#set: centisome position=63.400387    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
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{{#set: common name=Esi_0000_0340|Esi0000_0340}}
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* UNIPROT:
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{{#set: reaction associated=DIHYDROFOLATEREDUCT-RXN|THYMIDYLATESYN-RXN}}
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** [http://www.uniprot.org/uniprot/P60654 P60654]
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{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7199|PWY-3841|1CMET2-PWY|PWY-7187|PWY0-166|PWY-7184|PWY-6614}}
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** [http://www.uniprot.org/uniprot/P60653 P60653]
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** [http://www.uniprot.org/uniprot/P60651 P60651]
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** [http://www.uniprot.org/uniprot/Q57757 Q57757]
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** [http://www.uniprot.org/uniprot/P73270 P73270]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=agmatinase, partial}}
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{{#set: common name=Ureohydrolase}}
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{{#set: ec number=EC-3.5.3.11}}
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{{#set: gene associated=Ec-17_004300|Ec-22_003700|Ec-17_004310}}
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{{#set: in pathway=PWY-6305|PWY0-823|PWY-40}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:47, 21 March 2018

Reaction AGMATIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • agmatinase, partial
    • Ureohydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 agmatine[c] => 1 putrescine[c] + 1 urea[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 3 reactions found over 4 reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway): PWY0-823
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I: PWY-40
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=AGMATIN-RXN&oldid=29343"