Difference between revisions of "RXN-8988"

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(Created page with "Category:Gene == Gene Ec-10_000880 == * left end position: ** 965607 * transcription direction: ** POSITIVE * right end position: ** 971432 * centisome position: ** 14.853...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8988 RXN-8988] == * direction: ** LEFT-TO-RIGHT * common name: ** Succinate--CoA ligase (GDP-fo...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
== Gene Ec-10_000880 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8988 RXN-8988] ==
* left end position:
+
* direction:
** 965607
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** LEFT-TO-RIGHT
* transcription direction:
+
* common name:
** POSITIVE
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** Succinate--CoA ligase (GDP-forming), alpha subunit
* right end position:
+
* ec number:
** 971432
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** [http://enzyme.expasy.org/EC/6.2.1.4 EC-6.2.1.4]
* centisome position:
+
** 14.853242   
+
 
* Synonym(s):
 
* Synonym(s):
** Esi_0138_0072
 
** Esi0138_0072
 
  
== Reactions associated ==
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== Reaction Formula ==
* Reaction: [[F16ALDOLASE-RXN]]
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* With identifiers:
 +
** 1 [[ITACONATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[CPD-1137]][c] '''+''' 1 [[GDP]][c] '''+''' 1 [[Pi]][c]
 +
* With common name(s):
 +
** 1 itaconate[c] '''+''' 1 coenzyme A[c] '''+''' 1 GTP[c] '''=>''' 1 itaconyl-CoA[c] '''+''' 1 GDP[c] '''+''' 1 phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-10_000030]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
*** Assignment: go-term
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*** Assignment: EC-NUMBER
* Reaction: [[RXN-8631]]
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== Pathways  ==
 +
* [[PWY-5749]], itaconate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5749 PWY-5749]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
*** Assignment: go-term
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*** Tool: [[pathwaytools]]
== Pathways associated ==
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* [[PWY-1042]]
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* [[P341-PWY]]
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* [[PWY66-373]]
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* [[GLUCONEO-PWY]]
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* [[GLYCOLYSIS]]
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* [[SUCSYN-PWY]]
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* [[PWY-7385]]
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* [[ANAGLYCOLYSIS-PWY]]
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* [[CALVIN-PWY]]
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* [[PWY-1861]]
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* [[PWY-6142]]
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* [[PWY-5484]]
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* [[P185-PWY]]
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* [[PWY66-399]]
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== External links  ==
 
== External links  ==
{{#set: left end position=965607}}
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* LIGAND-RXN:
{{#set: transcription direction=POSITIVE}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02405 R02405]
{{#set: right end position=971432}}
+
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: centisome position=14.853242    }}
+
{{#set: common name=Succinate--CoA ligase (GDP-forming), alpha subunit}}
{{#set: common name=Esi_0138_0072|Esi0138_0072}}
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{{#set: ec number=EC-6.2.1.4}}
{{#set: reaction associated=F16ALDOLASE-RXN|RXN-8631}}
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{{#set: gene associated=Ec-10_000030}}
{{#set: pathway associated=PWY-1042|P341-PWY|PWY66-373|GLUCONEO-PWY|GLYCOLYSIS|SUCSYN-PWY|PWY-7385|ANAGLYCOLYSIS-PWY|CALVIN-PWY|PWY-1861|PWY-6142|PWY-5484|P185-PWY|PWY66-399}}
+
{{#set: in pathway=PWY-5749}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:53, 21 March 2018

Reaction RXN-8988

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Succinate--CoA ligase (GDP-forming), alpha subunit
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 itaconate[c] + 1 coenzyme A[c] + 1 GTP[c] => 1 itaconyl-CoA[c] + 1 GDP[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5749, itaconate degradation: PWY-5749
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links