Difference between revisions of "Ec-16 001000"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.4.4-RXN 1.2.4.4-RXN] == * direction: ** REVERSIBLE * common name: ** Dehydrogenase, E1 componen...")
(Created page with "Category:Gene == Gene Ec-16_001000 == * left end position: ** 1145858 * transcription direction: ** NEGATIVE * right end position: ** 1159832 * centisome position: ** 21.4...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.2.4.4-RXN 1.2.4.4-RXN] ==
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== Gene Ec-16_001000 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 1145858
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* common name:
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* transcription direction:
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** Dehydrogenase, E1 component
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** NEGATIVE
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** Branched chain alpha-keto acid dehydrogenase E1 beta subunit
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* right end position:
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* ec number:
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** 1159832
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** [http://enzyme.expasy.org/EC/1.2.4.4 EC-1.2.4.4]
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* centisome position:
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** 21.467445   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0205_0043
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** Esi0205_0043
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** ACO, C-term
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACONITATEDEHYDR-RXN]]
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** 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[BCAA-dehydrogenase-2MP-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* With common name(s):
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** 1 an [apo BCAA dehydrogenase E2 protein] N6-lipoyl-L-lysine[c] '''+''' 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H+[c] '''<=>''' 1 an [apo BCAA dehydrogenase E2 protein] N6-S-[2-methylpropanoyl]dihydrolipoyl-L-lysine[c] '''+''' 1 CO2[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-06_009010]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
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* Gene: [[Ec-10_006360]]
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* Reaction: [[ACONITATEHYDR-RXN]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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== Pathways  ==
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* Reaction: [[RXN-14047]]
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* [[PWY-5046]], 2-oxoisovalerate decarboxylation to isobutanoyl-CoA: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5046 PWY-5046]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-5750]]
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* [[PWY-5913]]
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* [[REDCITCYC]]
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* [[PWY-5392]]
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* [[P105-PWY]]
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* [[P23-PWY]]
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* [[PWY-7124]]
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* [[PWY-5690]]
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* [[GLYOXYLATE-BYPASS]]
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* [[FERMENTATION-PWY]]
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* [[PWY-6728]]
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* [[PWY-6549]]
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* [[PWY-7254]]
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* [[TCA]]
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* [[PWY66-398]]
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* [[PWY-6969]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=1145858}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01701 R01701]
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{{#set: transcription direction=NEGATIVE}}
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* UNIPROT:
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{{#set: right end position=1159832}}
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** [http://www.uniprot.org/uniprot/P21839 P21839]
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{{#set: centisome position=21.467445    }}
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** [http://www.uniprot.org/uniprot/P21953 P21953]
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{{#set: common name=Esi_0205_0043|Esi0205_0043|ACO, C-term}}
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** [http://www.uniprot.org/uniprot/P37940 P37940]
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{{#set: reaction associated=ACONITATEDEHYDR-RXN|ACONITATEHYDR-RXN|RXN-14047}}
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** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
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{{#set: pathway associated=PWY-5750|PWY-5913|REDCITCYC|PWY-5392|P105-PWY|P23-PWY|PWY-7124|PWY-5690|GLYOXYLATE-BYPASS|FERMENTATION-PWY|PWY-6728|PWY-6549|PWY-7254|TCA|PWY66-398|PWY-6969}}
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** [http://www.uniprot.org/uniprot/P37941 P37941]
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** [http://www.uniprot.org/uniprot/P11178 P11178]
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** [http://www.uniprot.org/uniprot/P12694 P12694]
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** [http://www.uniprot.org/uniprot/P09061 P09061]
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** [http://www.uniprot.org/uniprot/P09060 P09060]
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** [http://www.uniprot.org/uniprot/P11960 P11960]
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** [http://www.uniprot.org/uniprot/O84344 O84344]
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** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
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** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
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** [http://www.uniprot.org/uniprot/P35738 P35738]
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** [http://www.uniprot.org/uniprot/P50136 P50136]
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** [http://www.uniprot.org/uniprot/O48615 O48615]
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** [http://www.uniprot.org/uniprot/O03849 O03849]
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** [http://www.uniprot.org/uniprot/Q53592 Q53592]
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** [http://www.uniprot.org/uniprot/Q53593 Q53593]
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** [http://www.uniprot.org/uniprot/O82450 O82450]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Dehydrogenase, E1 component}}
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{{#set: common name=Branched chain alpha-keto acid dehydrogenase E1 beta subunit}}
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{{#set: ec number=EC-1.2.4.4}}
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{{#set: gene associated=Ec-06_009010|Ec-10_006360}}
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{{#set: in pathway=PWY-5046}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:53, 21 March 2018

Gene Ec-16_001000

  • left end position:
    • 1145858
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 1159832
  • centisome position:
    • 21.467445
  • Synonym(s):
    • Esi_0205_0043
    • Esi0205_0043
    • ACO, C-term

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-16_001000&oldid=30090"