Difference between revisions of "RXN0-5330"

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(Created page with "Category:Gene == Gene Ec-24_002360 == * left end position: ** 2680034 * transcription direction: ** NEGATIVE * right end position: ** 2689432 * centisome position: ** 53.7...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5330 RXN0-5330] == * direction: ** LEFT-TO-RIGHT * common name: ** NADH dehydrogenase (ubiquin...")
 
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-24_002360 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5330 RXN0-5330] ==
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* left end position:
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* direction:
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** 2680034
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** NADH dehydrogenase (ubiquinone)
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* right end position:
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* ec number:
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** 2689432
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** [http://enzyme.expasy.org/EC/1.6.5.9 EC-1.6.5.9]
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* centisome position:
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** 53.733166   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0060_0108
 
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** Esi0060_0108
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* Reaction: [[RXN0-2381]]
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* With identifiers:
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** 1 [[Ubiquinones]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Ubiquinols]][c]
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* With common name(s):
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** 1 a ubiquinone[c] '''+''' 1 H+[c] '''+''' 1 NADH[c] '''=>''' 1 NAD+[c] '''+''' 1 an ubiquinol[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-18_003900]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-05_005740]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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*** Assignment: GO-TERM
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* Reaction: [[RXN0-2382]]
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* Gene: [[Ec-02_006350]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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*** Assignment: GO-TERM
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* Reaction: [[TRYPSYN-RXN]]
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== Pathways  ==
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* [[PWY0-1567]], NADH to cytochrome bo oxidase electron transfer II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1567 PWY0-1567]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY0-1568]], NADH to cytochrome bd oxidase electron transport II: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1568 PWY0-1568]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7269]], NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7269 PWY-7269]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7279 PWY-7279]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: ec-number
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*** Tool: [[pathwaytools]]
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** Source: [[orthology-aragem]]
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== Pathways associated ==
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* [[TRPSYN-PWY]]
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* [[PWY-6949]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=2680034}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23152 23152]
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{{#set: right end position=2689432}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: centisome position=53.733166    }}
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{{#set: common name=NADH dehydrogenase (ubiquinone)}}
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{{#set: common name=Esi_0060_0108|Esi0060_0108}}
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{{#set: ec number=EC-1.6.5.9}}
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{{#set: reaction associated=RXN0-2381|RXN0-2382|TRYPSYN-RXN}}
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{{#set: gene associated=Ec-18_003900|Ec-05_005740|Ec-02_006350}}
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{{#set: pathway associated=TRPSYN-PWY|PWY-6949}}
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{{#set: in pathway=PWY0-1567|PWY0-1568|PWY-7269|PWY-7279}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 19:54, 21 March 2018

Reaction RXN0-5330

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • NADH dehydrogenase (ubiquinone)
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a ubiquinone[c] + 1 H+[c] + 1 NADH[c] => 1 NAD+[c] + 1 an ubiquinol[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1567, NADH to cytochrome bo oxidase electron transfer II: PWY0-1567
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1568, NADH to cytochrome bd oxidase electron transport II: PWY0-1568
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7269, NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast): PWY-7269
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7279, aerobic respiration II (cytochrome c) (yeast): PWY-7279
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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