Difference between revisions of "Ec-25 002110"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7682 RXN-7682] == * direction: ** LEFT-TO-RIGHT * common name: ** xanthine dehydrogenase * ec n...")
(Created page with "Category:Gene == Gene Ec-25_002110 == * left end position: ** 2405422 * transcription direction: ** NEGATIVE * right end position: ** 2413496 * centisome position: ** 54.0...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7682 RXN-7682] ==
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== Gene Ec-25_002110 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2405422
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* common name:
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* transcription direction:
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** xanthine dehydrogenase
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/1.17.1.4 EC-1.17.1.4]
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** 2413496
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* centisome position:
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** 54.043037   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0116_0004
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** Esi0116_0004
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[4OHBENZOATE-OCTAPRENYLTRANSFER-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[HYPOXANTHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[XANTHINE]][c] '''+''' 1 [[PROTON]][c]
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* With common name(s):
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** 1 NAD+[c] '''+''' 1 hypoxanthine[c] '''+''' 1 H2O[c] '''=>''' 1 NADH[c] '''+''' 1 xanthine[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-20_000210]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-20_000230]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** Assignment: automated-name-match
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** Source: [[orthology-aragem]]
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* Reaction: [[GPPSYN-RXN]]
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== Pathways  ==
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* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
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** '''4''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: go-term
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== Pathways associated ==
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* [[PWY-7736]]
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* [[PWY-7410]]
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* [[PWY-6859]]
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* [[PWY-7709]]
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* [[PWY-6383]]
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* [[PWY-7182]]
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* [[PWY-6708]]
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* [[PWY-7141]]
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* [[PWY-5123]]
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* [[PWY-5122]]
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* [[PWY-7102]]
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* [[PWY-7659]]
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* [[PWY-5870]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2405422}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24670 24670]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2413496}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01768 R01768]
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{{#set: centisome position=54.043037    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Esi_0116_0004|Esi0116_0004}}
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{{#set: common name=xanthine dehydrogenase}}
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{{#set: reaction associated=4OHBENZOATE-OCTAPRENYLTRANSFER-RXN|GPPSYN-RXN}}
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{{#set: ec number=EC-1.17.1.4}}
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{{#set: pathway associated=PWY-7736|PWY-7410|PWY-6859|PWY-7709|PWY-6383|PWY-7182|PWY-6708|PWY-7141|PWY-5123|PWY-5122|PWY-7102|PWY-7659|PWY-5870}}
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{{#set: gene associated=Ec-20_000210|Ec-20_000230}}
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{{#set: in pathway=P164-PWY|PWY-6596|SALVADEHYPOX-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 19:55, 21 March 2018

Gene Ec-25_002110

  • left end position:
    • 2405422
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 2413496
  • centisome position:
    • 54.043037
  • Synonym(s):
    • Esi_0116_0004
    • Esi0116_0004

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-25_002110&oldid=30272"