Difference between revisions of "PEPCARBOX-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17783 RXN-17783] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-CoA dehydrogenase ** a...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoenolpyruvate...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17783 RXN-17783] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Acyl-CoA dehydrogenase
+
** Phosphoenolpyruvate carboxylase
−
** acyl-CoA dehydrogenase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.8 EC-1.3.8]
+
** [http://enzyme.expasy.org/EC/4.1.1.31 EC-4.1.1.31]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-15436]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[CPD0-1162]][c]
+
** 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[HCO3]][c] '''=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (5Z)-tetradecenoyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''=>''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 (2E,5Z)-tetradecenoyl-CoA[c]
+
** 1 phosphoenolpyruvate[c] '''+''' 1 hydrogen carbonate[c] '''=>''' 1 oxaloacetate[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-14_001600]]
+
* Gene: [[Ec-28_003470]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* Gene: [[Ec-03_003490]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Ec-16_004260]]
+
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4429 PWYQT-4429]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7115 PWY-7115]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-241 PWY-241]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6146]], Methanobacterium thermoautotrophicum biosynthetic metabolism: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6146 PWY-6146]
 +
** '''9''' reactions found over '''16''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''8''' reactions found over '''16''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00345 R00345]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P28594 P28594]
 +
** [http://www.uniprot.org/uniprot/P43920 P43920]
 +
** [http://www.uniprot.org/uniprot/P29195 P29195]
 +
** [http://www.uniprot.org/uniprot/P51059 P51059]
 +
** [http://www.uniprot.org/uniprot/P00864 P00864]
 +
** [http://www.uniprot.org/uniprot/P12880 P12880]
 +
** [http://www.uniprot.org/uniprot/P10490 P10490]
 +
** [http://www.uniprot.org/uniprot/P16097 P16097]
 +
** [http://www.uniprot.org/uniprot/P27154 P27154]
 +
** [http://www.uniprot.org/uniprot/P06516 P06516]
 +
** [http://www.uniprot.org/uniprot/Q43267 Q43267]
 +
** [http://www.uniprot.org/uniprot/Q41197 Q41197]
 +
** [http://www.uniprot.org/uniprot/P29194 P29194]
 +
** [http://www.uniprot.org/uniprot/P30694 P30694]
 +
** [http://www.uniprot.org/uniprot/P15804 P15804]
 +
** [http://www.uniprot.org/uniprot/Q43268 Q43268]
 +
** [http://www.uniprot.org/uniprot/Q01647 Q01647]
 +
** [http://www.uniprot.org/uniprot/Q01648 Q01648]
 +
** [http://www.uniprot.org/uniprot/Q02735 Q02735]
 +
** [http://www.uniprot.org/uniprot/Q02909 Q02909]
 +
** [http://www.uniprot.org/uniprot/Q42730 Q42730]
 +
** [http://www.uniprot.org/uniprot/Q41198 Q41198]
 +
** [http://www.uniprot.org/uniprot/P51063 P51063]
 +
** [http://www.uniprot.org/uniprot/Q40103 Q40103]
 +
** [http://www.uniprot.org/uniprot/Q40104 Q40104]
 +
** [http://www.uniprot.org/uniprot/Q40105 Q40105]
 +
** [http://www.uniprot.org/uniprot/Q40102 Q40102]
 +
** [http://www.uniprot.org/uniprot/Q41836 Q41836]
 +
** [http://www.uniprot.org/uniprot/O22118 O22118]
 +
** [http://www.uniprot.org/uniprot/O22119 O22119]
 +
** [http://www.uniprot.org/uniprot/O48623 O48623]
 +
** [http://www.uniprot.org/uniprot/Q42634 Q42634]
 +
** [http://www.uniprot.org/uniprot/O23946 O23946]
 +
** [http://www.uniprot.org/uniprot/O23947 O23947]
 +
** [http://www.uniprot.org/uniprot/Q84VW9 Q84VW9]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Acyl-CoA dehydrogenase}}
+
{{#set: common name=Phosphoenolpyruvate carboxylase}}
−
{{#set: common name=acyl-CoA dehydrogenase}}
+
{{#set: ec number=EC-4.1.1.31}}
−
{{#set: ec number=EC-1.3.8}}
+
{{#set: gene associated=Ec-28_003470}}
−
{{#set: gene associated=Ec-14_001600|Ec-03_003490|Ec-16_004260}}
+
{{#set: in pathway=PWY-5913|PWY-1622|PWYQT-4429|PWY-7115|PWY-241|P23-PWY|PWY-7117|PWY-6549|PWY-6142|PWY-7124|PWY-6146|FERMENTATION-PWY}}
−
{{#set: in pathway=}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:57, 21 March 2018

Reaction PEPCARBOX-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phosphoenolpyruvate carboxylase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway): PWY-1622
    • 6 reactions found over 13 reactions in the full pathway
  • PWYQT-4429, CO2 fixation into oxaloacetate (anaplerotic): PWYQT-4429
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type: PWY-7115
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type: PWY-241
    • 4 reactions found over 5 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type: PWY-7117
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III: PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-6146, Methanobacterium thermoautotrophicum biosynthetic metabolism: PWY-6146
    • 9 reactions found over 16 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 8 reactions found over 16 reactions in the full pathway

Reconstruction information

External links





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