Difference between revisions of "Ec-11 002430"

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(Collaborative curation)
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6158 PWY-6158] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7742 TAX-77...")
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== ECTOGEM description ==
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[[Category:Pathway]]
== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6158 PWY-6158] ==
Model summary: [[MEDIA:ESiliculosus_final.txt|summary]]
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* taxonomic range:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-7742 TAX-7742]
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* common name:
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** creatine-phosphate biosynthesis
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* Synonym(s):
  
Download '''AuReMe''' Input/Output [https://mybox.inria.fr/f/715c7378e9/?raw=1 data]
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== Reaction(s) found ==
 
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'''1''' reactions found over '''1''' reactions in the full pathway
The automatic reconstruction of ''Ectocarpus_Siliculosus'' results to a Genome scale [[MEDIA:ESiliculosus_final_lvl3.xml|Model]] containing 1977 reactions, 2132 metabolites, 2281 genes and 1101 pathways. This GeM was obtained based on the following sources:
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* [[CREATINE-KINASE-RXN]]
* Based on annotation data:
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** 1 associated gene(s):
** Tool: [http://bioinformatics.ai.sri.com/ptools/ Pathway tools]
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*** [[Ec-14_002050]]
*** Creation of a metabolic network containing 1661 reactions
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** 1 reconstruction source(s) associated:
* Based on orthology data:
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*** [[annotation-esiliculosus_genome]]
** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
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== Reaction(s) not found ==
*** From template ''ARAGEM'' creation of a metabolic network containing: 440 reactions
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== External links  ==
* Based on expertise:
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* LIGAND-MAP:
*** 65 reaction(s) added
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** [http://www.genome.jp/dbget-bin/www_bget?map00330 map00330]
* Based on gap-filling:
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{{#set: taxonomic range=TAX-7742}}
** Tool: [https://pypi.python.org/pypi/meneco meneco]
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{{#set: common name=creatine-phosphate biosynthesis}}
*** 85 reaction(s) added
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{{#set: reaction found=1}}
 
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{{#set: total reaction=1}}
[[FILE:venn.png|frameless|border]]
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{{#set: completion rate=100.0}}
 
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== Collaborative curation ==  
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* Suggest reactions to add or remove:
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
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* Suggest new reactions to create and add:
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** Download this [[MEDIA:Reaction_creator.csv|form]]
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
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* Send the filled form(s) to: gem-aureme@inria.fr
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Revision as of 20:22, 17 March 2018

Pathway PWY-6158

  • taxonomic range:
  • common name:
    • creatine-phosphate biosynthesis
  • Synonym(s):

Reaction(s) found

1 reactions found over 1 reactions in the full pathway

Reaction(s) not found

External links