Difference between revisions of "DNA-With-Pyrimidine-Dimers"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14897 RXN-14897] == * direction: ** LEFT-TO-RIGHT * common name: ** Pectin lyase fold * ec numb...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14897 RXN-14897] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** plant sterol biosynthesis
+
** Pectin lyase fold
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/4.2.2.10 EC-4.2.2.10]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''10''' reactions found over '''36''' reactions in the full pathway
+
* With identifiers:
−
* [[1.14.13.70-RXN]]
+
** 1 [[Pectin]][c] '''=>''' 1 [[CPD-11241]][c]
−
* [[CYCLOARTENOL-SYNTHASE-RXN]]
+
* With common name(s):
−
* [[CYCLOEUCALENOL-CYCLOISOMERASE-RXN]]
+
** 1 a pectin[c] '''=>''' 1 4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate[c]
−
* [[PWY-5670]]
+
 
−
* [[RXN-4021]]
+
== Genes associated with this reaction  ==
−
* [[RXN-4144]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[RXN-4209]]
+
* [[Ec-00_009490]]
−
* [[RXN-4210]]
+
** ESILICULOSUS_GENOME
−
* [[RXN-707]]
+
***AUTOMATED-NAME-MATCH
−
* [[RXN3O-218]]
+
* [[Ec-00_011490]]
−
== Reaction(s) not found ==
+
** ESILICULOSUS_GENOME
−
* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.143-RXN 2.1.1.143-RXN]
+
***AUTOMATED-NAME-MATCH
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11925 RXN-11925]
+
* [[Ec-23_004040]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11926 RXN-11926]
+
** ESILICULOSUS_GENOME
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11927 RXN-11927]
+
***AUTOMATED-NAME-MATCH
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11928 RXN-11928]
+
* [[Ec-18_004360]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11929 RXN-11929]
+
** ESILICULOSUS_GENOME
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11930 RXN-11930]
+
***AUTOMATED-NAME-MATCH
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11931 RXN-11931]
+
* [[Ec-25_001080]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11932 RXN-11932]
+
** ESILICULOSUS_GENOME
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11933 RXN-11933]
+
***AUTOMATED-NAME-MATCH
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11934 RXN-11934]
+
* [[Ec-20_003100]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11935 RXN-11935]
+
** ESILICULOSUS_GENOME
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11936 RXN-11936]
+
***AUTOMATED-NAME-MATCH
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11937 RXN-11937]
+
* [[Ec-13_002650]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11938 RXN-11938]
+
** ESILICULOSUS_GENOME
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11939 RXN-11939]
+
***AUTOMATED-NAME-MATCH
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4161 RXN-4161]
+
* [[Ec-20_003120]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4221 RXN-4221]
+
** ESILICULOSUS_GENOME
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4222 RXN-4222]
+
***AUTOMATED-NAME-MATCH
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4224 RXN-4224]
+
* [[Ec-09_004230]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4242 RXN-4242]
+
** ESILICULOSUS_GENOME
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4243 RXN-4243]
+
***AUTOMATED-NAME-MATCH
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-708 RXN-708]
+
* [[Ec-12_000410]]
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8352 RXN-8352]
+
** ESILICULOSUS_GENOME
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8353 RXN-8353]
+
***AUTOMATED-NAME-MATCH
 +
* [[Ec-00_006370]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-08_000930]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-02_001160]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-08_000920]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-13_002640]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-00_010800]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-13_002330]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-21_001490]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-21_001360]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-08_000940]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-14_000190]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-02_001170]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-04_001770]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-14_004740]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-13_002310]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-08_000860]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-14_000350]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-21_003140]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
* [[Ec-09_004260]]
 +
** ESILICULOSUS_GENOME
 +
***AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-7243]], pectin degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7243 PWY-7243]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PLANTCYC : PWY-2541
+
{{#set: direction=LEFT-TO-RIGHT}}
−
* ARACYC:
+
{{#set: common name=Pectin lyase fold}}
−
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-2541 PWY-2541]
+
{{#set: ec number=EC-4.2.2.10}}
−
{{#set: taxonomic range=TAX-3398}}
+
{{#set: gene associated=Ec-00_009490|Ec-00_011490|Ec-23_004040|Ec-18_004360|Ec-25_001080|Ec-20_003100|Ec-13_002650|Ec-20_003120|Ec-09_004230|Ec-12_000410|Ec-00_006370|Ec-08_000930|Ec-02_001160|Ec-08_000920|Ec-13_002640|Ec-00_010800|Ec-13_002330|Ec-21_001490|Ec-21_001360|Ec-08_000940|Ec-14_000190|Ec-02_001170|Ec-04_001770|Ec-14_004740|Ec-13_002310|Ec-08_000860|Ec-14_000350|Ec-21_003140|Ec-09_004260}}
−
{{#set: common name=plant sterol biosynthesis}}
+
{{#set: in pathway=PWY-7243}}
−
{{#set: reaction found=10}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reaction not found=36}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
{{#set: completion rate=28.0}}
+
{{#set: reconstruction tool=pathwaytools}}

Revision as of 20:25, 17 March 2018

Reaction RXN-14897

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pectin lyase fold
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a pectin[c] => 1 4-(4-deoxy-α-D-galact-4-enuronosyl)-D-galacturonate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7243, pectin degradation I: PWY-7243
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=DNA-With-Pyrimidine-Dimers&oldid=8822"