Difference between revisions of "1.1.1.271-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2562 RXN-2562] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/2....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCDEHYDRAT-RXN DTDPGLUCDEHYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dTDP-...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-2562 RXN-2562] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCDEHYDRAT-RXN DTDPGLUCDEHYDRAT-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** dTDP-glucose 4,6-dehydratase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.95 EC-2.1.1.95]
+
** [http://enzyme.expasy.org/EC/4.2.1.46 EC-4.2.1.46]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DELTA-TOCOPHEROL]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[BETA-TOCOPHEROL]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 δ-tocopherol[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 β-tocopherol[c] '''+''' 1 H+[c]
+
** 1 dTDP-α-D-glucose[c] '''=>''' 1 dTDP-4-dehydro-6-deoxy-α-D-glucopyranose[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-18_000910]]
+
* Gene: [[Ec-27_005770]]
−
** [[pantograph]]-[[aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-01_007350]]
 +
** Source: [[orthology-aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1422]], vitamin E biosynthesis (tocopherols): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1422 PWY-1422]
+
* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7315 PWY-7315]
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7316 PWY-7316]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7301]], dTDP-4-O-demethyl-β-L-noviose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7301 PWY-7301]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7312]], dTDP-D-β-fucofuranose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7312 PWY-7312]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7657]], dTDP-β-L-digitoxose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7657 PWY-7657]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7318 PWY-7318]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6942]], dTDP-D-desosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6942 PWY-6942]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7104]], dTDP-L-megosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7104 PWY-7104]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7440]], dTDP-β-L-4-epi-vancosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7440 PWY-7440]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6953]], dTDP-3-acetamido-α-D-fucos biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6953 PWY-6953]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6808]], dTDP-D-forosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6808 PWY-6808]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7413]], dTDP-6-deoxy-α-D-allose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7413 PWY-7413]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6976]], dTDP-L-mycarose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6976 PWY-6976]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7688 PWY-7688]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6974]], dTDP-L-olivose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6974 PWY-6974]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6973 PWY-6973]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-3221]], dTDP-L-rhamnose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3221 PWY-3221]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7414]], dTDP-α-D-mycaminose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7414 PWY-7414]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
Line 28: Line 69:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07504 R07504]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
 +
** [http://www.uniprot.org/uniprot/P44914 P44914]
 +
** [http://www.uniprot.org/uniprot/P29782 P29782]
 +
** [http://www.uniprot.org/uniprot/P27830 P27830]
 +
** [http://www.uniprot.org/uniprot/P55294 P55294]
 +
** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
 +
** [http://www.uniprot.org/uniprot/P37759 P37759]
 +
** [http://www.uniprot.org/uniprot/P26391 P26391]
 +
** [http://www.uniprot.org/uniprot/Q59626 Q59626]
 +
** [http://www.uniprot.org/uniprot/P39630 P39630]
 +
** [http://www.uniprot.org/uniprot/P37777 P37777]
 +
** [http://www.uniprot.org/uniprot/P37761 P37761]
 +
** [http://www.uniprot.org/uniprot/Q54144 Q54144]
 +
** [http://www.uniprot.org/uniprot/Q56173 Q56173]
 +
** [http://www.uniprot.org/uniprot/Q55420 Q55420]
 +
** [http://www.uniprot.org/uniprot/P55293 P55293]
 +
** [http://www.uniprot.org/uniprot/O66249 O66249]
 +
** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
 +
** [http://www.uniprot.org/uniprot/O08246 O08246]
 +
** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
 +
** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.1.1.95}}
+
{{#set: common name=dTDP-glucose 4,6-dehydratase}}
−
{{#set: gene associated=Ec-18_000910}}
+
{{#set: ec number=EC-4.2.1.46}}
−
{{#set: in pathway=PWY-1422}}
+
{{#set: gene associated=Ec-27_005770|Ec-01_007350}}
 +
{{#set: in pathway=PWY-7315|PWY-7316|PWY-7301|PWY-7312|PWY-7657|PWY-7318|PWY-6942|PWY-7104|PWY-7440|DTDPRHAMSYN-PWY|PWY-6953|PWY-6808|PWY-7413|PWY-6976|PWY-7688|PWY-6974|PWY-6973|PWY-3221|PWY-7414}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:27, 21 March 2018

Reaction DTDPGLUCDEHYDRAT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dTDP-glucose 4,6-dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7315, dTDP-N-acetylthomosamine biosynthesis: PWY-7315
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7316, dTDP-N-acetylviosamine biosynthesis: PWY-7316
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis: PWY-7301
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7312, dTDP-D-β-fucofuranose biosynthesis: PWY-7312
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7657, dTDP-β-L-digitoxose biosynthesis: PWY-7657
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7318, dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis: PWY-7318
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6942, dTDP-D-desosamine biosynthesis: PWY-6942
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-7104, dTDP-L-megosamine biosynthesis: PWY-7104
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-7440, dTDP-β-L-4-epi-vancosamine biosynthesis: PWY-7440
    • 1 reactions found over 8 reactions in the full pathway
  • DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis I: DTDPRHAMSYN-PWY
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6953, dTDP-3-acetamido-α-D-fucos biosynthesis: PWY-6953
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6808, dTDP-D-forosamine biosynthesis: PWY-6808
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7413, dTDP-6-deoxy-α-D-allose biosynthesis: PWY-7413
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6976, dTDP-L-mycarose biosynthesis: PWY-6976
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-7688, dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis: PWY-7688
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6974, dTDP-L-olivose biosynthesis: PWY-6974
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6973, dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis: PWY-6973
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-3221, dTDP-L-rhamnose biosynthesis II: PWY-3221
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7414, dTDP-α-D-mycaminose biosynthesis: PWY-7414
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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