Difference between revisions of "2.5.1.32-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6964 PWY-6964] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Phytoene synthase; ch...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6964 PWY-6964] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2836 TAX-2836]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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* common name:
 
* common name:
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** ammonia assimilation cycle II
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** Phytoene synthase; chloroplast precursor
 
* Synonym(s):
 
* Synonym(s):
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** GS/GOGAT pathway
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** PSase
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** geranylgeranyl-diphosphate geranylgeranyltransferase
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
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* [[GLUTAMATE-SYNTHASE-FERREDOXIN-RXN]]
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** 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Ec-00_000720]]
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** 2 geranylgeranyl diphosphate[c] '''=>''' 1 prephytoene diphosphate[c] '''+''' 1 diphosphate[c]
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*** [[Ec-26_004630]]
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*** [[Ec-27_004970]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-04_002810]]
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*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[GLUTAMINESYN-RXN]]
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*** Assignment: EC-NUMBER
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** 4 associated gene(s):
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== Pathways  ==
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*** [[Ec-15_004120]]
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* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
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*** [[Ec-15_004110]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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*** [[Ec-09_000640]]
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* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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*** [[Ec-21_003610]]
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** '''4''' reactions found over '''8''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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== Reconstruction information  ==
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*** [[annotation-esiliculosus_genome]]
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* Category: [[annotation]]
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*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1117}}
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* RHEA:
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{{#set: taxonomic range=TAX-2836}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22296 22296]
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{{#set: taxonomic range=TAX-33090}}
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* LIGAND-RXN:
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{{#set: common name=ammonia assimilation cycle II}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
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{{#set: common name=GS/GOGAT pathway}}
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* UNIPROT:
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{{#set: reaction found=2}}
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** [http://www.uniprot.org/uniprot/P53609 P53609]
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{{#set: total reaction=2}}
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** [http://www.uniprot.org/uniprot/P37295 P37295]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P22872 P22872]
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** [http://www.uniprot.org/uniprot/P53610 P53610]
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** [http://www.uniprot.org/uniprot/P53612 P53612]
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** [http://www.uniprot.org/uniprot/P17056 P17056]
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** [http://www.uniprot.org/uniprot/P49293 P49293]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Phytoene synthase; chloroplast precursor}}
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{{#set: common name=PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
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{{#set: gene associated=Ec-04_002810}}
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{{#set: in pathway=PWY-6287|PWY-6475}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:33, 21 March 2018

Reaction 2.5.1.32-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Phytoene synthase; chloroplast precursor
  • Synonym(s):
    • PSase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 geranylgeranyl diphosphate[c] => 1 prephytoene diphosphate[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6287, neurosporene biosynthesis: PWY-6287
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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