Difference between revisions of "2.7.11.2-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5391 PWY-5391] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-5...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.223-RXN 2.4.1.223-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** acetylglucosaminylt...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5391 PWY-5391] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.223-RXN 2.4.1.223-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** syringetin biosynthesis
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** acetylglucosaminyltransferase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.4.1.223 EC-2.4.1.223]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''1''' reactions found over '''5''' reactions in the full pathway
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* With identifiers:
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* [[RXN-8450]]
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** 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''+''' 1 [[GlcA-Gal-Gal-Xyl-Proteins]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Ec-19_002750]]
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** 1 UDP-N-acetyl-α-D-glucosamine[c] '''+''' 1 β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein][c] '''=>''' 1 H+[c] '''+''' 1 α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein][c] '''+''' 1 UDP[c]
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*** [[Ec-19_002760]]
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*** [[Ec-08_003510]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-aragem]]
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* Gene: [[Ec-14_005460]]
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== Reaction(s) not found ==
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13718 RXN-13718]
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*** Assignment: GO-TERM
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-525 RXN-525]
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* Gene: [[Ec-15_002870]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8451 RXN-8451]
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** Source: [[annotation-esiliculosus_genome]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8452 RXN-8452]
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*** Assignment: GO-TERM
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* Gene: [[Ec-08_002720]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-14_003840]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-02_004080]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-23_000390]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-23_003230]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
 +
== Pathways  ==
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* [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558]
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** '''1''' reactions found over '''13''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-58024}}
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* LIGAND-RXN:
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{{#set: common name=syringetin biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07397 R07397]
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{{#set: reaction found=1}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=5}}
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{{#set: common name=acetylglucosaminyltransferase}}
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{{#set: completion rate=20.0}}
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{{#set: ec number=EC-2.4.1.223}}
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{{#set: gene associated=Ec-14_005460|Ec-15_002870|Ec-08_002720|Ec-14_003840|Ec-02_004080|Ec-23_000390|Ec-23_003230}}
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{{#set: in pathway=PWY-6558}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 14:15, 21 March 2018

Reaction 2.4.1.223-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acetylglucosaminyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UDP-N-acetyl-α-D-glucosamine[c] + 1 β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein][c] => 1 H+[c] + 1 α-N-acetyl-D-glucosaminyl-(1->4)-β-D-glucosyluronate-(1->3)-β-D-galactosyl-(1->3)-β-D-galactosyl-(1->4)-β-D-xylosyl-[core protein][c] + 1 UDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6558, heparan sulfate biosynthesis (late stages): PWY-6558
    • 1 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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