Difference between revisions of "23S-rRNA-pseudouridine955-2504-2580"

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(Created page with "Category:Gene == Gene Ec-02_002430 == * left end position: ** 2587903 * transcription direction: ** POSITIVE * right end position: ** 2596040 * centisome position: ** 39.6...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] == * direction: ** LEFT-TO-RIGHT * common name: ** lycopene beta cyclase * ec...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Ec-02_002430 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-150 RXN1F-150] ==
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* left end position:
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* direction:
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** 2587903
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** lycopene beta cyclase
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* right end position:
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* ec number:
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** 2596040
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** [http://enzyme.expasy.org/EC/5.5.1.19 EC-5.5.1.19]
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* centisome position:
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** 39.64439   
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* Synonym(s):
 
* Synonym(s):
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** Esi_0408_0002
 
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** Esi0408_0002
 
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** DGD
 
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN-1225]]
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* With identifiers:
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** esiliculosus_genome
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** 1 [[CPD1F-114]][c] '''=>''' 1 [[CPD1F-126]][c]
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***ec-number
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* With common name(s):
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== Pathways associated ==
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** 1 all-trans-lycopene[c] '''=>''' 1 γ-carotene[c]
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* [[PWY-401]]
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* [[PWY-7666]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-00_005850]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-07_007260]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-02_005510]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-00_005820]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-24_002150]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-24_002140]]
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** Source: [[orthology-aragem]]
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* Gene: [[Ec-10_006240]]
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** Source: [[orthology-aragem]]
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== Pathways ==
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* [[PWY-5943]], β-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5943 PWY-5943]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7591]], okenone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7591 PWY-7591]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2587903}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32222 32222]
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{{#set: right end position=2596040}}
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* LIGAND-RXN:
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{{#set: centisome position=39.64439    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R05341 R05341]
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{{#set: common name=Esi_0408_0002|Esi0408_0002|DGD}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN-1225}}
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{{#set: common name=lycopene beta cyclase}}
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{{#set: pathway associated=PWY-401|PWY-7666}}
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{{#set: ec number=EC-5.5.1.19}}
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{{#set: gene associated=Ec-00_005850|Ec-07_007260|Ec-02_005510|Ec-00_005820|Ec-24_002150|Ec-24_002140|Ec-10_006240}}
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{{#set: in pathway=PWY-5943|PWY-7591}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:25, 21 March 2018

Reaction RXN1F-150

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • lycopene beta cyclase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-lycopene[c] => 1 γ-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5943, β-carotene biosynthesis: PWY-5943
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7591, okenone biosynthesis: PWY-7591
    • 1 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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