Difference between revisions of "3.1.26.5-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonuclease P, Rpp40...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5083 PWY-5083] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
+
** LEFT-TO-RIGHT
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
+
 
* common name:
 
* common name:
−
** NAD/NADH phosphorylation and dephosphorylation
+
** Ribonuclease P, Rpp40
 +
** ribonuclease P
 +
** RNAse P, Rpr2/Rpp21 subunit
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''4''' reactions found over '''6''' reactions in the full pathway
+
* With identifiers:
−
* [[NAD-KIN-RXN]]
+
** 1 [[CPD0-2352]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD0-2353]][c] '''+''' 1 [[tRNA-fragment]][c]
−
** 3 associated gene(s):
+
* With common name(s):
−
*** [[Ec-18_003910]]
+
** 1 a tRNA precursor with a 5' extension and a short 3' extension[c] '''+''' 1 H2O[c] '''=>''' 1 a tRNA precursor with a short 3' extension[c] '''+''' 1 a tRNA fragment[c]
−
*** [[Ec-22_000250]]
+
 
−
*** [[Ec-08_006010]]
+
== Genes associated with this reaction  ==
−
** 1 reconstruction source(s) associated:
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[annotation-esiliculosus_genome]]
+
* Gene: [[Ec-03_005340]]
−
* [[NADH-DEHYDROG-A-RXN]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 15 associated gene(s):
+
*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Ec-08_005450]]
+
* Gene: [[Ec-01_005810]]
−
*** [[Ec-01_008630]]
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-20_001030]]
+
*** Assignment: GO-TERM
−
*** [[Ec-10_005810]]
+
* Gene: [[Ec-22_001370]]
−
*** [[Ec-21_001150]]
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-21_004880]]
+
*** Assignment: GO-TERM
−
*** [[Ec-05_005740]]
+
* Gene: [[Ec-04_004570]]
−
*** [[Ec-02_006350]]
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-18_003900]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
*** [[Ec-03_000900]]
+
== Pathways  ==
−
*** [[Ec-10_001380]]
+
* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
−
*** [[Ec-01_000420]]
+
** '''2''' reactions found over '''10''' reactions in the full pathway
−
*** [[Ec-19_001720]]
+
== Reconstruction information  ==
−
*** [[Ec-21_003400]]
+
* Category: [[annotation]]
−
*** [[Ec-06_007580]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 1 reconstruction source(s) associated:
+
*** Tool: [[pathwaytools]]
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[PYRNUTRANSHYDROGEN-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-01_007000]]
+
−
*** [[Ec-21_003320]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[RXN-5822]]
+
−
** 13 associated gene(s):
+
−
*** [[Ec-07_000930]]
+
−
*** [[Ec-26_006410]]
+
−
*** [[Ec-19_002110]]
+
−
*** [[Ec-21_003560]]
+
−
*** [[Ec-19_000870]]
+
−
*** [[Ec-00_000940]]
+
−
*** [[Ec-20_002470]]
+
−
*** [[Ec-21_005990]]
+
−
*** [[Ec-24_000520]]
+
−
*** [[Ec-05_004740]]
+
−
*** [[Ec-20_003560]]
+
−
*** [[Ec-05_000260]]
+
−
*** [[Ec-27_003870]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=NADH-KINASE-RXN NADH-KINASE-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7703 RXN-7703]
+
 
== External links  ==
 
== External links  ==
−
* ARACYC:
+
* UNIPROT:
−
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5083 PWY-5083]
+
** [http://www.uniprot.org/uniprot/Q02773 Q02773]
−
{{#set: taxonomic range=TAX-4751}}
+
** [http://www.uniprot.org/uniprot/P41812 P41812]
−
{{#set: taxonomic range=TAX-33090}}
+
** [http://www.uniprot.org/uniprot/P0A5X8 P0A5X8]
−
{{#set: common name=NAD/NADH phosphorylation and dephosphorylation}}
+
** [http://www.uniprot.org/uniprot/P48206 P48206]
−
{{#set: reaction found=4}}
+
** [http://www.uniprot.org/uniprot/Q9JW46 Q9JW46]
−
{{#set: total reaction=6}}
+
** [http://www.uniprot.org/uniprot/Q9PNX5 Q9PNX5]
−
{{#set: completion rate=67.0}}
+
** [http://www.uniprot.org/uniprot/Q9CJ73 Q9CJ73]
 +
** [http://www.uniprot.org/uniprot/P29433 P29433]
 +
** [http://www.uniprot.org/uniprot/P25817 P25817]
 +
** [http://www.uniprot.org/uniprot/P22835 P22835]
 +
** [http://www.uniprot.org/uniprot/P25814 P25814]
 +
** [http://www.uniprot.org/uniprot/P0A7Y8 P0A7Y8]
 +
** [http://www.uniprot.org/uniprot/Q55005 Q55005]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Ribonuclease P, Rpp40}}
 +
{{#set: common name=ribonuclease P}}
 +
{{#set: common name=RNAse P, Rpr2/Rpp21 subunit}}
 +
{{#set: ec number=EC-3.1.26.5}}
 +
{{#set: gene associated=Ec-03_005340|Ec-01_005810|Ec-22_001370|Ec-04_004570}}
 +
{{#set: in pathway=PWY0-1479}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:26, 21 March 2018

Reaction 3.1.26.5-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribonuclease P, Rpp40
    • ribonuclease P
    • RNAse P, Rpr2/Rpp21 subunit
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNA precursor with a 5' extension and a short 3' extension[c] + 1 H2O[c] => 1 a tRNA precursor with a short 3' extension[c] + 1 a tRNA fragment[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1479, tRNA processing: PWY0-1479
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=3.1.26.5-RXN&oldid=26913"