Difference between revisions of "3.1.26.5-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=METHYLENETETRAHYDROMETHANOPTERIN METHYLENETETRAHYDROMETHANOPTERIN] == * smiles: ** CC4([CH]3(C(...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Ribonuclease P, Rpp40...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=METHYLENETETRAHYDROMETHANOPTERIN METHYLENETETRAHYDROMETHANOPTERIN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.26.5-RXN 3.1.26.5-RXN] ==
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* smiles:
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* direction:
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** CC4([CH]3(C(C)N(C2(C=CC(CC(O)C(O)C(O)COC1(C(O)C(C(COP([O-])(=O)OC(C(=O)[O-])CCC(=O)[O-])O1)O))=CC=2))CN3C5(C(=O)NC(N)=NC(N4)=5)))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=GBMIGEWJAPFSQI-CAFBYHECSA-K
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* common name:
 
* common name:
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** 5,10-methylene-tetrahydromethanopterin
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** Ribonuclease P, Rpp40
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* molecular weight:
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** ribonuclease P
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** 785.677   
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** RNAse P, Rpr2/Rpp21 subunit
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
 
* Synonym(s):
 
* Synonym(s):
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** N5,N10-methylene-5,6,7,8-tetrahydromethanopterin
 
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** 5,10-methylene-5,6,7,8-tetrahydromethanopterin
 
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** methylene-H4MPT
 
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** 5,10-methylene-H4MPT
 
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** N5,N10-methylenetetrahydromethanopterin
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-15635]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[CPD0-2352]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD0-2353]][c] '''+''' 1 [[tRNA-fragment]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 a tRNA precursor with a 5' extension and a short 3' extension[c] '''+''' 1 H2O[c] '''=>''' 1 a tRNA precursor with a short 3' extension[c] '''+''' 1 a tRNA fragment[c]
 +
 
 +
== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Ec-03_005340]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Ec-01_005810]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-22_001370]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: GO-TERM
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* Gene: [[Ec-04_004570]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
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* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* UNIPROT:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=46931094 46931094]
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** [http://www.uniprot.org/uniprot/Q02773 Q02773]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P41812 P41812]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57818 57818]
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** [http://www.uniprot.org/uniprot/P0A5X8 P0A5X8]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P48206 P48206]
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** [http://www.genome.jp/dbget-bin/www_bget?C04377 C04377]
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** [http://www.uniprot.org/uniprot/Q9JW46 Q9JW46]
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* HMDB : HMDB60401
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** [http://www.uniprot.org/uniprot/Q9PNX5 Q9PNX5]
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{{#set: smiles=CC4([CH]3(C(C)N(C2(C=CC(CC(O)C(O)C(O)COC1(C(O)C(C(COP([O-])(=O)OC(C(=O)[O-])CCC(=O)[O-])O1)O))=CC=2))CN3C5(C(=O)NC(N)=NC(N4)=5)))}}
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** [http://www.uniprot.org/uniprot/Q9CJ73 Q9CJ73]
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{{#set: inchi key=InChIKey=GBMIGEWJAPFSQI-CAFBYHECSA-K}}
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** [http://www.uniprot.org/uniprot/P29433 P29433]
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{{#set: common name=5,10-methylene-tetrahydromethanopterin}}
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** [http://www.uniprot.org/uniprot/P25817 P25817]
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{{#set: molecular weight=785.677    }}
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** [http://www.uniprot.org/uniprot/P22835 P22835]
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{{#set: common name=N5,N10-methylene-5,6,7,8-tetrahydromethanopterin|5,10-methylene-5,6,7,8-tetrahydromethanopterin|methylene-H4MPT|5,10-methylene-H4MPT|N5,N10-methylenetetrahydromethanopterin}}
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** [http://www.uniprot.org/uniprot/P25814 P25814]
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{{#set: consumed by=RXN-15635}}
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** [http://www.uniprot.org/uniprot/P0A7Y8 P0A7Y8]
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** [http://www.uniprot.org/uniprot/Q55005 Q55005]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Ribonuclease P, Rpp40}}
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{{#set: common name=ribonuclease P}}
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{{#set: common name=RNAse P, Rpr2/Rpp21 subunit}}
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{{#set: ec number=EC-3.1.26.5}}
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{{#set: gene associated=Ec-03_005340|Ec-01_005810|Ec-22_001370|Ec-04_004570}}
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{{#set: in pathway=PWY0-1479}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:26, 21 March 2018

Reaction 3.1.26.5-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Ribonuclease P, Rpp40
    • ribonuclease P
    • RNAse P, Rpr2/Rpp21 subunit
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNA precursor with a 5' extension and a short 3' extension[c] + 1 H2O[c] => 1 a tRNA precursor with a short 3' extension[c] + 1 a tRNA fragment[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1479, tRNA processing: PWY0-1479
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

External links






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