Difference between revisions of "3.2.1.8-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.8-RXN 3.2.1.8-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Endo-1,4-beta-xylanase,...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.8-RXN 3.2.1.8-RXN] ==
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* taxonomic range:
+
* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** gluconeogenesis II (Methanobacterium thermoautotrophicum)
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** Endo-1,4-beta-xylanase, family GH10
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.2.1.8 EC-3.2.1.8]
 
* Synonym(s):
 
* Synonym(s):
−
** carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''10''' reactions found over '''14''' reactions in the full pathway
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* With identifiers:
−
* [[2PGADEHYDRAT-RXN]]
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** n [[WATER]][c] '''+''' 1 [[1-4-beta-Xylan]][c] '''=>''' n [[1-4-D-xylooligosaccharides]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Ec-14_005400]]
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** n H2O[c] '''+''' 1 a (1→4)-β-D-xylan[c] '''=>''' n a (1->4)-β-D-xylan oligosaccharide[c]
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*** [[Ec-27_004000]]
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−
*** [[Ec-26_004120]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-07_005310]]
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*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[3PGAREARR-RXN]]
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*** Assignment: EC-NUMBER
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** 7 associated gene(s):
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== Pathways  ==
−
*** [[Ec-27_000330]]
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* [[PWY-6784]], cellulose and hemicellulose degradation (cellulolosome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6784 PWY-6784]
−
*** [[Ec-24_002670]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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*** [[Ec-10_005410]]
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== Reconstruction information  ==
−
*** [[Ec-03_002160]]
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* Category: [[annotation]]
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*** [[Ec-03_002170]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-01_000980]]
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*** Tool: [[pathwaytools]]
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*** [[Ec-06_009930]]
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−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
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−
*** [[orthology-aragem]]
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−
* [[F16ALDOLASE-RXN]]
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−
** 4 associated gene(s):
+
−
*** [[Ec-10_004980]]
+
−
*** [[Ec-01_008040]]
+
−
*** [[Ec-10_000880]]
+
−
*** [[Ec-14_001680]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[PEPCARBOX-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Ec-28_003470]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[PEPDEPHOS-RXN]]
+
−
** 3 associated gene(s):
+
−
*** [[Ec-26_004170]]
+
−
*** [[Ec-06_006860]]
+
−
*** [[Ec-12_000950]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
*** [[orthology-aragem]]
+
−
* [[PGLUCISOM-RXN]]
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−
** 3 associated gene(s):
+
−
*** [[Ec-24_002470]]
+
−
*** [[Ec-13_003530]]
+
−
*** [[Ec-13_003810]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[PYRUFLAVREDUCT-RXN]]
+
−
** 3 associated gene(s):
+
−
*** [[Ec-18_003420]]
+
−
*** [[Ec-15_004230]]
+
−
*** [[Ec-23_002710]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[PYRUVATE-CARBOXYLASE-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Ec-03_001890]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[RXN0-5224]]
+
−
** 8 associated gene(s):
+
−
*** [[Ec-03_001960]]
+
−
*** [[Ec-10_002770]]
+
−
*** [[Ec-06_004120]]
+
−
*** [[Ec-05_001290]]
+
−
*** [[Ec-27_005680]]
+
−
*** [[Ec-07_004610]]
+
−
*** [[Ec-22_001150]]
+
−
*** [[Ec-16_004700]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[TRIOSEPISOMERIZATION-RXN]]
+
−
** 4 associated gene(s):
+
−
*** [[Ec-08_000500]]
+
−
*** [[Ec-24_000360]]
+
−
*** [[Ec-03_002790]]
+
−
*** [[Ec-23_004160]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
*** [[orthology-aragem]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.6-RXN 1.2.7.6-RXN]
+
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
+
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
+
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* [http://metacyc.org/META/NEW-IMAGE?object=R302-RXN R302-RXN]
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-2157}}
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* UNIPROT:
−
{{#set: common name=gluconeogenesis II (Methanobacterium thermoautotrophicum)}}
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** [http://www.uniprot.org/uniprot/P10478 P10478]
−
{{#set: common name=carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)}}
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** [http://www.uniprot.org/uniprot/Q9R5M7 Q9R5M7]
−
{{#set: reaction found=10}}
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** [http://www.uniprot.org/uniprot/Q7M519 Q7M519]
−
{{#set: total reaction=14}}
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** [http://www.uniprot.org/uniprot/Q7M520 Q7M520]
−
{{#set: completion rate=71.0}}
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** [http://www.uniprot.org/uniprot/P35809 P35809]
 +
** [http://www.uniprot.org/uniprot/Q7M513 Q7M513]
 +
** [http://www.uniprot.org/uniprot/Q7M0W8 Q7M0W8]
 +
** [http://www.uniprot.org/uniprot/P23556 P23556]
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** [http://www.uniprot.org/uniprot/Q7M4V8 Q7M4V8]
 +
** [http://www.uniprot.org/uniprot/Q9R5M6 Q9R5M6]
 +
** [http://www.uniprot.org/uniprot/Q7M0X0 Q7M0X0]
 +
** [http://www.uniprot.org/uniprot/Q7M0W9 Q7M0W9]
 +
** [http://www.uniprot.org/uniprot/P45703 P45703]
 +
** [http://www.uniprot.org/uniprot/P18429 P18429]
 +
** [http://www.uniprot.org/uniprot/P40943 P40943]
 +
** [http://www.uniprot.org/uniprot/P54865 P54865]
 +
** [http://www.uniprot.org/uniprot/Q00177 Q00177]
 +
** [http://www.uniprot.org/uniprot/P79046 P79046]
 +
** [http://www.uniprot.org/uniprot/O83007 O83007]
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** [http://www.uniprot.org/uniprot/Q9UUQ2 Q9UUQ2]
 +
** [http://www.uniprot.org/uniprot/Q9HFA4 Q9HFA4]
 +
** [http://www.uniprot.org/uniprot/Q9F1V3 Q9F1V3]
 +
** [http://www.uniprot.org/uniprot/Q9AJR9 Q9AJR9]
 +
** [http://www.uniprot.org/uniprot/P29417 P29417]
 +
** [http://www.uniprot.org/uniprot/P26514 P26514]
 +
** [http://www.uniprot.org/uniprot/P26220 P26220]
 +
** [http://www.uniprot.org/uniprot/Q9R5P8 Q9R5P8]
 +
** [http://www.uniprot.org/uniprot/Q9R5P9 Q9R5P9]
 +
** [http://www.uniprot.org/uniprot/P09850 P09850]
 +
** [http://www.uniprot.org/uniprot/P14768 P14768]
 +
** [http://www.uniprot.org/uniprot/P45796 P45796]
 +
** [http://www.uniprot.org/uniprot/P29126 P29126]
 +
** [http://www.uniprot.org/uniprot/P29127 P29127]
 +
** [http://www.uniprot.org/uniprot/Q02244 Q02244]
 +
** [http://www.uniprot.org/uniprot/P40944 P40944]
 +
** [http://www.uniprot.org/uniprot/P55334 P55334]
 +
** [http://www.uniprot.org/uniprot/Q56013 Q56013]
 +
** [http://www.uniprot.org/uniprot/Q59256 Q59256]
 +
** [http://www.uniprot.org/uniprot/P55328 P55328]
 +
** [http://www.uniprot.org/uniprot/Q01426 Q01426]
 +
** [http://www.uniprot.org/uniprot/P55331 P55331]
 +
** [http://www.uniprot.org/uniprot/Q59257 Q59257]
 +
** [http://www.uniprot.org/uniprot/P51584 P51584]
 +
** [http://www.uniprot.org/uniprot/P49942 P49942]
 +
** [http://www.uniprot.org/uniprot/P55333 P55333]
 +
** [http://www.uniprot.org/uniprot/P55332 P55332]
 +
** [http://www.uniprot.org/uniprot/Q59790 Q59790]
 +
** [http://www.uniprot.org/uniprot/Q59300 Q59300]
 +
** [http://www.uniprot.org/uniprot/Q59301 Q59301]
 +
** [http://www.uniprot.org/uniprot/Q59674 Q59674]
 +
** [http://www.uniprot.org/uniprot/Q59675 Q59675]
 +
** [http://www.uniprot.org/uniprot/Q60037 Q60037]
 +
** [http://www.uniprot.org/uniprot/Q12579 Q12579]
 +
** [http://www.uniprot.org/uniprot/Q12580 Q12580]
 +
** [http://www.uniprot.org/uniprot/Q60046 Q60046]
 +
** [http://www.uniprot.org/uniprot/P93185 P93185]
 +
** [http://www.uniprot.org/uniprot/P93186 P93186]
 +
** [http://www.uniprot.org/uniprot/P93187 P93187]
 +
** [http://www.uniprot.org/uniprot/Q12603 Q12603]
 +
** [http://www.uniprot.org/uniprot/O69230 O69230]
 +
** [http://www.uniprot.org/uniprot/O30426 O30426]
 +
** [http://www.uniprot.org/uniprot/O52373 O52373]
 +
** [http://www.uniprot.org/uniprot/Q59278 Q59278]
 +
** [http://www.uniprot.org/uniprot/Q9RKN6 Q9RKN6]
 +
** [http://www.uniprot.org/uniprot/P00694 P00694]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Endo-1,4-beta-xylanase, family GH10}}
 +
{{#set: ec number=EC-3.2.1.8}}
 +
{{#set: gene associated=Ec-07_005310}}
 +
{{#set: in pathway=PWY-6784}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:11, 21 March 2018

Reaction 3.2.1.8-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Endo-1,4-beta-xylanase, family GH10
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6784, cellulose and hemicellulose degradation (cellulolosome): PWY-6784
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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