Difference between revisions of "Biomass rxn"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=NITRATE-REDUCTASE-NADH-RXN NITRATE-REDUCTASE-NADH-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5034 PWY-5034] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=NITRATE-REDUCTASE-NADH-RXN NITRATE-REDUCTASE-NADH-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5034 PWY-5034] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
 
* common name:
 
* common name:
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** NAD(P)H-Nitrate reductase
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** GA12 biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/1.7.1.1 EC-1.7.1.1]
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* Synonym(s):
 
* Synonym(s):
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** gibberellin A12 biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''6''' reactions in the full pathway
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** 1 [[PROTON]][c] '''+''' 1 [[NITRATE]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[NITRITE]][c]
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* [[1.14.13.79-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 H+[c] '''+''' 1 nitrate[c] '''+''' 1 NADH[c] '''=>''' 1 NAD+[c] '''+''' 1 H2O[c] '''+''' 1 nitrite[c]
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*** [[Ec-00_005820]]
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*** [[Ec-10_006240]]
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== Genes associated with this reaction  ==
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*** [[Ec-00_005850]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Ec-10_005740]]
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*** [[orthology-aragem]]
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** ESILICULOSUS_GENOME
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* [[RXN1F-160]]
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***EC-NUMBER
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** 3 associated gene(s):
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== Pathways  ==
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*** [[Ec-10_006240]]
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* [[PWY-381]], nitrate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-381 PWY-381]
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*** [[Ec-00_005850]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Ec-00_005820]]
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[annotation]]
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*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN1F-161]]
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*** Tool: [[pathwaytools]]
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** 3 associated gene(s):
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*** [[Ec-00_005820]]
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*** [[Ec-10_006240]]
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*** [[Ec-00_005850]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.14.13.78-RXN 1.14.13.78-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-5242 RXN-5242]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7580 RXN-7580]
 
== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17913 17913]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5034 PWY-5034]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-33090}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00794 R00794]
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{{#set: common name=GA12 biosynthesis}}
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* UNIPROT:
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{{#set: common name=gibberellin A12 biosynthesis}}
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** [http://www.uniprot.org/uniprot/Q39607 Q39607]
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/Q41201 Q41201]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/P17569 P17569]
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/P54233 P54233]
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** [http://www.uniprot.org/uniprot/P36841 P36841]
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** [http://www.uniprot.org/uniprot/P27967 P27967]
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** [http://www.uniprot.org/uniprot/P27969 P27969]
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** [http://www.uniprot.org/uniprot/P11035 P11035]
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** [http://www.uniprot.org/uniprot/P08509 P08509]
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** [http://www.uniprot.org/uniprot/P11605 P11605]
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** [http://www.uniprot.org/uniprot/P23312 P23312]
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** [http://www.uniprot.org/uniprot/P17570 P17570]
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** [http://www.uniprot.org/uniprot/P16081 P16081]
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** [http://www.uniprot.org/uniprot/Q01170 Q01170]
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** [http://www.uniprot.org/uniprot/P39865 P39865]
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** [http://www.uniprot.org/uniprot/P11832 P11832]
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** [http://www.uniprot.org/uniprot/P39869 P39869]
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** [http://www.uniprot.org/uniprot/Q43265 Q43265]
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** [http://www.uniprot.org/uniprot/P43101 P43101]
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** [http://www.uniprot.org/uniprot/P43100 P43100]
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** [http://www.uniprot.org/uniprot/Q42497 Q42497]
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** [http://www.uniprot.org/uniprot/P39866 P39866]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=NAD(P)H-Nitrate reductase}}
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{{#set: ec number=EC-1.7.1.1}}
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{{#set: gene associated=Ec-10_005740}}
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{{#set: in pathway=PWY-381}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 14:19, 21 March 2018

Pathway PWY-5034

  • taxonomic range:
  • common name:
    • GA12 biosynthesis
  • Synonym(s):
    • gibberellin A12 biosynthesis

Reaction(s) found

3 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Biomass_rxn&oldid=17565"