Difference between revisions of "CATAL-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CATAL-RXN CATAL-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Catalase-peroxidase haem **...")
 
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CATAL-RXN CATAL-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33208 TAX-33208]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** L-ornithine biosynthesis II
+
** Catalase-peroxidase haem
 +
** Haem peroxidase, plant/fungal/bacterial
 +
** Haem peroxidase
 +
** catalase/peroxidase
 +
** Catalase core domain
 +
** Catalase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/1.11.1.6 EC-1.11.1.6]
 +
** [http://enzyme.expasy.org/EC/1.11.1.21 EC-1.11.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''3''' reactions found over '''4''' reactions in the full pathway
+
* With identifiers:
−
* [[GLUTKIN-RXN]]
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** 2 [[HYDROGEN-PEROXIDE]][c] '''=>''' 2 [[WATER]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c]
−
** 3 associated gene(s):
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* With common name(s):
−
*** [[Ec-27_003730]]
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** 2 hydrogen peroxide[c] '''=>''' 2 H2O[c] '''+''' 1 oxygen[c]
−
*** [[Ec-24_000610]]
+
 
−
*** [[Ec-07_007490]]
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== Genes associated with this reaction  ==
−
** 2 reconstruction source(s) associated:
+
Genes have been associated with this reaction based on different elements listed below.
−
*** [[annotation-esiliculosus_genome]]
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* Gene: [[Ec-02_000470]]
−
*** [[orthology-aragem]]
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** Source: [[annotation-esiliculosus_genome]]
−
* [[GLUTSEMIALDEHYDROG-RXN]]
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*** Assignment: EC-NUMBER
−
** 1 associated gene(s):
+
* Gene: [[Ec-07_001420]]
−
*** [[Ec-07_007490]]
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** Source: [[annotation-esiliculosus_genome]]
−
** 1 reconstruction source(s) associated:
+
*** Assignment: EC-NUMBER
−
*** [[orthology-aragem]]
+
** Source: [[orthology-aragem]]
−
* [[ORNITHINE-GLU-AMINOTRANSFERASE-RXN]]
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* Gene: [[Ec-00_008210]]
−
** 1 associated gene(s):
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-21_003730]]
+
*** Assignment: EC-NUMBER
−
** 1 reconstruction source(s) associated:
+
* Gene: [[Ec-11_003410]]
−
*** [[annotation-esiliculosus_genome]]
+
** Source: [[annotation-esiliculosus_genome]]
−
== Reaction(s) not found ==
+
*** Assignment: EC-NUMBER
−
* [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-NADP+-RXN GLUTAMATE-DEHYDROGENASE-NADP+-RXN]
+
* Gene: [[Ec-00_008230]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Ec-00_010030]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-00_008240]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-07_004600]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-05_003380]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-5506]], methanol oxidation to formaldehyde IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5506 PWY-5506]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[DETOX1-PWY-1]], reactive oxygen species degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY-1 DETOX1-PWY-1]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[DETOX1-PWY]], superoxide radicals degradation: [http://metacyc.org/META/NEW-IMAGE?object=DETOX1-PWY DETOX1-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-33208}}
+
* RHEA:
−
{{#set: common name=L-ornithine biosynthesis II}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20309 20309]
−
{{#set: reaction found=3}}
+
* LIGAND-RXN:
−
{{#set: total reaction=4}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00009 R00009]
−
{{#set: completion rate=75.0}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P11934 P11934]
 +
** [http://www.uniprot.org/uniprot/P24270 P24270]
 +
** [http://www.uniprot.org/uniprot/P21179 P21179]
 +
** [http://www.uniprot.org/uniprot/P24168 P24168]
 +
** [http://www.uniprot.org/uniprot/Q7M184 Q7M184]
 +
** [http://www.uniprot.org/uniprot/P0A327 P0A327]
 +
** [http://www.uniprot.org/uniprot/P45737 P45737]
 +
** [http://www.uniprot.org/uniprot/P42321 P42321]
 +
** [http://www.uniprot.org/uniprot/O28050 O28050]
 +
** [http://www.uniprot.org/uniprot/Q59337 Q59337]
 +
** [http://www.uniprot.org/uniprot/P77872 P77872]
 +
** [http://www.uniprot.org/uniprot/P00432 P00432]
 +
** [http://www.uniprot.org/uniprot/P15202 P15202]
 +
** [http://www.uniprot.org/uniprot/P06115 P06115]
 +
** [http://www.uniprot.org/uniprot/P07820 P07820]
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** [http://www.uniprot.org/uniprot/P17750 P17750]
 +
** [http://www.uniprot.org/uniprot/P13029 P13029]
 +
** [http://www.uniprot.org/uniprot/P17336 P17336]
 +
** [http://www.uniprot.org/uniprot/P04040 P04040]
 +
** [http://www.uniprot.org/uniprot/P25890 P25890]
 +
** [http://www.uniprot.org/uniprot/P04762 P04762]
 +
** [http://www.uniprot.org/uniprot/P29756 P29756]
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** [http://www.uniprot.org/uniprot/P44390 P44390]
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** [http://www.uniprot.org/uniprot/P42234 P42234]
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** [http://www.uniprot.org/uniprot/Q9JRF5 Q9JRF5]
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** [http://www.uniprot.org/uniprot/P94377 P94377]
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** [http://www.uniprot.org/uniprot/Q9ZKX5 Q9ZKX5]
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** [http://www.uniprot.org/uniprot/Q59296 Q59296]
 +
** [http://www.uniprot.org/uniprot/P55306 P55306]
 +
** [http://www.uniprot.org/uniprot/P26901 P26901]
 +
** [http://www.uniprot.org/uniprot/P14412 P14412]
 +
** [http://www.uniprot.org/uniprot/P07145 P07145]
 +
** [http://www.uniprot.org/uniprot/P17598 P17598]
 +
** [http://www.uniprot.org/uniprot/Q41136 Q41136]
 +
** [http://www.uniprot.org/uniprot/P30567 P30567]
 +
** [http://www.uniprot.org/uniprot/P30263 P30263]
 +
** [http://www.uniprot.org/uniprot/P29422 P29422]
 +
** [http://www.uniprot.org/uniprot/P30266 P30266]
 +
** [http://www.uniprot.org/uniprot/P37743 P37743]
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** [http://www.uniprot.org/uniprot/P33569 P33569]
 +
** [http://www.uniprot.org/uniprot/P18123 P18123]
 +
** [http://www.uniprot.org/uniprot/P55303 P55303]
 +
** [http://www.uniprot.org/uniprot/Q01297 Q01297]
 +
** [http://www.uniprot.org/uniprot/P49318 P49318]
 +
** [http://www.uniprot.org/uniprot/P18122 P18122]
 +
** [http://www.uniprot.org/uniprot/P49315 P49315]
 +
** [http://www.uniprot.org/uniprot/Q27710 Q27710]
 +
** [http://www.uniprot.org/uniprot/P45739 P45739]
 +
** [http://www.uniprot.org/uniprot/P0A323 P0A323]
 +
** [http://www.uniprot.org/uniprot/P55307 P55307]
 +
** [http://www.uniprot.org/uniprot/P55308 P55308]
 +
** [http://www.uniprot.org/uniprot/P55305 P55305]
 +
** [http://www.uniprot.org/uniprot/P50979 P50979]
 +
** [http://www.uniprot.org/uniprot/Q55110 Q55110]
 +
** [http://www.uniprot.org/uniprot/P12365 P12365]
 +
** [http://www.uniprot.org/uniprot/P73911 P73911]
 +
** [http://www.uniprot.org/uniprot/P77038 P77038]
 +
** [http://www.uniprot.org/uniprot/P25819 P25819]
 +
** [http://www.uniprot.org/uniprot/O48562 O48562]
 +
** [http://www.uniprot.org/uniprot/Q43206 Q43206]
 +
** [http://www.uniprot.org/uniprot/O22472 O22472]
 +
** [http://www.uniprot.org/uniprot/P30265 P30265]
 +
** [http://www.uniprot.org/uniprot/P48351 P48351]
 +
** [http://www.uniprot.org/uniprot/P48352 P48352]
 +
** [http://www.uniprot.org/uniprot/Q39633 Q39633]
 +
** [http://www.uniprot.org/uniprot/Q39634 Q39634]
 +
** [http://www.uniprot.org/uniprot/P32290 P32290]
 +
** [http://www.uniprot.org/uniprot/O81336 O81336]
 +
** [http://www.uniprot.org/uniprot/O81337 O81337]
 +
** [http://www.uniprot.org/uniprot/P49317 P49317]
 +
** [http://www.uniprot.org/uniprot/Q27487 Q27487]
 +
** [http://www.uniprot.org/uniprot/Q8MYL7 Q8MYL7]
 +
** [http://www.uniprot.org/uniprot/Q9Z598 Q9Z598]
 +
** [http://www.uniprot.org/uniprot/O61235 O61235]
 +
** [http://www.uniprot.org/uniprot/O33613 O33613]
 +
** [http://www.uniprot.org/uniprot/P77948 P77948]
 +
** [http://www.uniprot.org/uniprot/O73955 O73955]
 +
** [http://www.uniprot.org/uniprot/O59651 O59651]
 +
** [http://www.uniprot.org/uniprot/O31066 O31066]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=Catalase-peroxidase haem}}
 +
{{#set: common name=Haem peroxidase, plant/fungal/bacterial}}
 +
{{#set: common name=Haem peroxidase}}
 +
{{#set: common name=catalase/peroxidase}}
 +
{{#set: common name=Catalase core domain}}
 +
{{#set: common name=Catalase}}
 +
{{#set: ec number=EC-1.11.1.6}}
 +
{{#set: ec number=EC-1.11.1.21}}
 +
{{#set: gene associated=Ec-02_000470|Ec-07_001420|Ec-00_008210|Ec-11_003410|Ec-00_008230|Ec-00_010030|Ec-00_008240|Ec-07_004600|Ec-05_003380}}
 +
{{#set: in pathway=PWY-5506|DETOX1-PWY-1|DETOX1-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:25, 21 March 2018

Reaction CATAL-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Catalase-peroxidase haem
    • Haem peroxidase, plant/fungal/bacterial
    • Haem peroxidase
    • catalase/peroxidase
    • Catalase core domain
    • Catalase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5506, methanol oxidation to formaldehyde IV: PWY-5506
    • 1 reactions found over 2 reactions in the full pathway
  • DETOX1-PWY-1, reactive oxygen species degradation: DETOX1-PWY-1
    • 5 reactions found over 6 reactions in the full pathway
  • DETOX1-PWY, superoxide radicals degradation: DETOX1-PWY
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links








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