Difference between revisions of "CODH-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] == * direction: ** REVERSIBLE * common name: ** 3-is...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALISOM-RXN 3-ISOPROPYLMALISOM-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** 3-isopropylmalate dehydratase
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** reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
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** Aconitase/3-isopropylmalate dehydratase, swivel
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* Synonym(s):
 
* Synonym(s):
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** (2R,3S)-3-isopropylmalate hydro-lyase
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** Wood pathway
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** β-isopropylmalate dehydratase
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** acetate synthesis
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** α-isopropylmalate isomerase
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** acetyl-CoA pathway
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** 3-isopropylmalate hydro-lyase
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** carbon monoxide dehydrogenase pathway
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** carbon fixation
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** CO2 fixation
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** Ljungdahl-Wood pathway
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** Wood-Ljungdahl pathway
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** reductive acetyl CoA pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''9''' reactions in the full pathway
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** 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c] '''<=>''' 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c]
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* [[1.5.1.20-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 (2S)-2-isopropylmalate[c] '''<=>''' 1 2-isopropylmaleate[c] '''+''' 1 H2O[c]
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*** [[Ec-03_002180]]
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*** [[Ec-08_003880]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-13_001950]]
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* [[FORMATETHFLIG-RXN]]
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** [[pantograph]]-[[aragem]]
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** 2 associated gene(s):
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* [[Ec-sdr_f_000030]]
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*** [[Ec-25_001900]]
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** [[pantograph]]-[[aragem]]
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*** [[Ec-01_009540]]
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* [[Ec-12_000170]]
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** 1 reconstruction source(s) associated:
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** ESILICULOSUS_GENOME
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*** [[annotation-esiliculosus_genome]]
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***EC-NUMBER
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* [[METHENYLTHFCYCLOHYDRO-RXN]]
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** [[pantograph]]-[[aragem]]
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** 2 associated gene(s):
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== Pathways  ==
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*** [[Ec-14_004070]]
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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*** [[Ec-15_001370]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
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*** [[annotation-esiliculosus_genome]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[METHYLENETHFDEHYDROG-NADP-RXN]]
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== Reconstruction information  ==
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** 3 associated gene(s):
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* [[orthology]]:
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*** [[Ec-15_001370]]
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** [[pantograph]]:
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*** [[Ec-14_004070]]
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*** [[aragem]]
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*** [[Ec-07_007470]]
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* [[annotation]]:
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** 1 reconstruction source(s) associated:
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** [[pathwaytools]]:
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*** [[annotation-esiliculosus_genome]]
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*** [[esiliculosus_genome]]
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* [[RXN-5061]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.4-RXN 1.2.7.4-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETYLSYNCLTH-RXN ACETYLSYNCLTH-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=FORMATE-DEHYDROGENASE-NADP+-RXN FORMATE-DEHYDROGENASE-NADP+-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHCOCLTH-RXN METHCOCLTH-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16293 16293]
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{{#set: taxonomic range=TAX-2}}
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* LIGAND-RXN:
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{{#set: common name=reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03968 R03968]
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{{#set: common name=Wood pathway|acetate synthesis|acetyl-CoA pathway|carbon monoxide dehydrogenase pathway|carbon fixation|CO2 fixation|Ljungdahl-Wood pathway|Wood-Ljungdahl pathway|reductive acetyl CoA pathway}}
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* UNIPROT:
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{{#set: reaction found=5}}
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** [http://www.uniprot.org/uniprot/Q9PLW1 Q9PLW1]
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/Q9JU82 Q9JU82]
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{{#set: completion rate=56.0}}
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** [http://www.uniprot.org/uniprot/P80858 P80858]
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** [http://www.uniprot.org/uniprot/Q9UZ07 Q9UZ07]
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** [http://www.uniprot.org/uniprot/Q9JU81 Q9JU81]
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** [http://www.uniprot.org/uniprot/Q58673 Q58673]
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** [http://www.uniprot.org/uniprot/Q02144 Q02144]
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** [http://www.uniprot.org/uniprot/P44968 P44968]
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** [http://www.uniprot.org/uniprot/Q58667 Q58667]
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** [http://www.uniprot.org/uniprot/P44438 P44438]
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** [http://www.uniprot.org/uniprot/P0A6A6 P0A6A6]
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** [http://www.uniprot.org/uniprot/Q9PLW2 Q9PLW2]
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** [http://www.uniprot.org/uniprot/Q44022 Q44022]
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** [http://www.uniprot.org/uniprot/Q44023 Q44023]
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** [http://www.uniprot.org/uniprot/Q44427 Q44427]
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** [http://www.uniprot.org/uniprot/P17279 P17279]
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** [http://www.uniprot.org/uniprot/P04787 P04787]
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** [http://www.uniprot.org/uniprot/P15717 P15717]
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** [http://www.uniprot.org/uniprot/P18250 P18250]
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** [http://www.uniprot.org/uniprot/Q02142 Q02142]
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** [http://www.uniprot.org/uniprot/P30126 P30126]
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** [http://www.uniprot.org/uniprot/P50181 P50181]
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** [http://www.uniprot.org/uniprot/P07264 P07264]
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** [http://www.uniprot.org/uniprot/P74207 P74207]
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** [http://www.uniprot.org/uniprot/O86534 O86534]
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** [http://www.uniprot.org/uniprot/O86535 O86535]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=3-isopropylmalate dehydratase}}
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{{#set: common name=Aconitase/3-isopropylmalate dehydratase, swivel}}
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{{#set: common name=(2R,3S)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|&alpha;-isopropylmalate isomerase|3-isopropylmalate hydro-lyase}}
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{{#set: gene associated=Ec-13_001950|Ec-sdr_f_000030|Ec-12_000170}}
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{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 20:29, 21 March 2018

Pathway CODH-PWY

  • taxonomic range:
  • common name:
    • reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
  • Synonym(s):
    • Wood pathway
    • acetate synthesis
    • acetyl-CoA pathway
    • carbon monoxide dehydrogenase pathway
    • carbon fixation
    • CO2 fixation
    • Ljungdahl-Wood pathway
    • Wood-Ljungdahl pathway
    • reductive acetyl CoA pathway

Reaction(s) found

5 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=CODH-PWY&oldid=27266"