Difference between revisions of "CRNFORCAT-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Riboflavi...")
(Created page with "Category:Gene == Gene Ec-25_001850 == * left end position: ** 2142362 * transcription direction: ** POSITIVE * right end position: ** 2155507 * centisome position: ** 48.1...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVIN-SYN-RXN RIBOFLAVIN-SYN-RXN] ==
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== Gene Ec-25_001850 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2142362
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* common name:
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* transcription direction:
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** Riboflavin synthase, putative
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.5.1.9 EC-2.5.1.9]
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** 2155507
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* centisome position:
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** 48.13282   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0116_0047
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** Esi0116_0047
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** MEP1
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-9839]]
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** 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[RIBOFLAVIN]][c] '''+''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c]
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* With common name(s):
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** 2 6,7-dimethyl-8-(1-D-ribityl)lumazine[c] '''+''' 1 H+[c] '''=>''' 1 riboflavin[c] '''+''' 1 5-amino-6-(D-ribitylamino)uracil[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Ec-00_004570]]
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** ESILICULOSUS_GENOME
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***EC-NUMBER
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-6167]], flavin biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6167 PWY-6167]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-6082]]
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* [[PWY-6073]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2142362}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20772 20772]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2155507}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
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{{#set: centisome position=48.13282    }}
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* UNIPROT:
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{{#set: common name=Esi_0116_0047|Esi0116_0047|MEP1}}
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** [http://www.uniprot.org/uniprot/P11998 P11998]
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{{#set: reaction associated=RXN-9839}}
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** [http://www.uniprot.org/uniprot/P16440 P16440]
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{{#set: pathway associated=PWY-6082|PWY-6073}}
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** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
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** [http://www.uniprot.org/uniprot/O24854 O24854]
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** [http://www.uniprot.org/uniprot/O26237 O26237]
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** [http://www.uniprot.org/uniprot/P66037 P66037]
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** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
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** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
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** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
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** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
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** [http://www.uniprot.org/uniprot/P45273 P45273]
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** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
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** [http://www.uniprot.org/uniprot/O66529 O66529]
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** [http://www.uniprot.org/uniprot/Q58584 Q58584]
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** [http://www.uniprot.org/uniprot/O28856 O28856]
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** [http://www.uniprot.org/uniprot/Q01994 Q01994]
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** [http://www.uniprot.org/uniprot/P61714 P61714]
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** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
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** [http://www.uniprot.org/uniprot/P38145 P38145]
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** [http://www.uniprot.org/uniprot/Q55532 Q55532]
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** [http://www.uniprot.org/uniprot/P73527 P73527]
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** [http://www.uniprot.org/uniprot/Q44680 Q44680]
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** [http://www.uniprot.org/uniprot/Q44681 Q44681]
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** [http://www.uniprot.org/uniprot/P50854 P50854]
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** [http://www.uniprot.org/uniprot/P50856 P50856]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=Riboflavin synthase, putative}}
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{{#set: ec number=EC-2.5.1.9}}
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{{#set: gene associated=Ec-00_004570}}
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{{#set: in pathway=PWY-6167|PWY-6168|RIBOSYN2-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:13, 21 March 2018

Gene Ec-25_001850

  • left end position:
    • 2142362
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2155507
  • centisome position:
    • 48.13282
  • Synonym(s):
    • Esi_0116_0047
    • Esi0116_0047
    • MEP1

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=CRNFORCAT-PWY&oldid=16734"