Difference between revisions of "Category:Pathway"

Latest revision as of 21:02, 21 March 2018

	Common name	Reaction found	Total reaction	Completion rate
1CMET2-PWY	N10-formyl-tetrahydrofolate biosynthesis N10-formyl-THF biosynthesis	9	9	100.0
2PHENDEG-PWY	Phenylethylamine degradation I	2	2	100.0
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY	4-hydroxyphenylacetate degradation 4-HPA degradation Homoprotocatechuate degradation	1	8	13.0
ACETOACETATE-DEG-PWY	Acetoacetate degradation (to acetyl CoA)	1	2	50.0
ADENOSYLHOMOCYSCAT-PWY	L-methionine salvage from L-homocysteine	2	3	67.0
ALACAT2-PWY	L-alanine degradation II (to D-lactate)	2	3	67.0
ALANINE-DEG3-PWY	L-alanine degradation III	1	1	100.0
ALANINE-SYN2-PWY	L-alanine biosynthesis II	1	1	100.0
ALANINE-VALINESYN-PWY	L-alanine biosynthesis I	1	3	33.0
ANAGLYCOLYSIS-PWY	Glycolysis III (from glucose) Anaerobic glycolysis Embden-Meyerhof-Parnas pathway EMP pathway Glycolysis III (glucokinase)	10	10	100.0
ANAPHENOXI-PWY	L-phenylalanine degradation II (anaerobic) Anaerobic L-phenylalanine oxidation	2	3	67.0
ARG-GLU-PWY	L-arginine degradation VII (arginase 3 pathway)	2	2	100.0
ARG-PRO-PWY	L-arginine degradation VI (arginase 2 pathway) L-proline biosynthesis from arginine	4	4	100.0
ARGASEDEG-PWY	L-arginine degradation I (arginase pathway) L-arginase degradative pathway L-glutamate biosynthesis	3	3	100.0
ARGDEG-III-PWY	L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)	2	3	67.0
ARGDEG-IV-PWY	L-arginine degradation VIII (arginine oxidase pathway)	1	4	25.0
ARGDEG-V-PWY	L-arginine degradation X (arginine monooxygenase pathway)	3	3	100.0
ARGININE-SYN4-PWY	L-ornithine biosynthesis II	3	4	75.0
ARGSPECAT-PWY	Spermine biosynthesis	2	2	100.0
ARGSYN-PWY	L-arginine biosynthesis I (via L-ornithine)	5	6	83.0
ARGSYNBSUB-PWY	L-arginine biosynthesis II (acetyl cycle)	9	9	100.0
ASPARAGINE-BIOSYNTHESIS	L-asparagine biosynthesis I	1	1	100.0
ASPARAGINE-DEG1-PWY	L-asparagine degradation I	1	1	100.0
ASPARAGINE-DEG1-PWY-1	L-asparagine degradation III (mammalian)	2	3	67.0
ASPARAGINESYN-PWY	L-asparagine biosynthesis II	1	1	100.0
ASPARTATE-DEG1-PWY	L-aspartate degradation I	1	1	100.0
ASPARTATESYN-PWY	L-aspartate biosynthesis L-aspartate biosynthesis and degradation	1	1	100.0
ASPASN-PWY	Superpathway of L-aspartate and L-asparagine biosynthesis Interconversion of L-aspartate and L-asparagine	4	7	57.0
BETA-ALA-DEGRADATION-I-PWY	Β-alanine degradation I	1	2	50.0
BETSYN-PWY	Glycine betaine biosynthesis I (Gram-negative bacteria)	2	2	100.0
BGALACT-PWY	Lactose degradation III Lactose degradation 3	1	1	100.0
BSUBPOLYAMSYN-PWY	Spermidine biosynthesis I Arginine degradation to spermidine Spermidine biosynthesis	2	2	100.0
CALVIN-PWY	Calvin-Benson-Bassham cycle Photosynthetic dark reactions Photosynthetic CO2 fixation Reductive pentose phosphate pathway Calvin cycle Carbon fixation Calvin-Benson cycle	13	13	100.0
CENTBENZCOA-PWY	Benzoyl-CoA degradation II (anaerobic) Central benzoyl-CoA pathway (anaerobic)	1	6	17.0
CENTFERM-PWY	Pyruvate fermentation to butanoate Central fermentation pathway Acetobutylicum fermentation Pyruvate fermentation to butyrate	4	7	57.0
CHLOROPHYLL-SYN	3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) Light-dependent aerobic 3,8-divinyl-chlorophyllide a biosynthesis I	6	9	67.0
CHOLINE-BETAINE-ANA-PWY	Choline degradation I Choline betaine anabolism	2	2	100.0
CITRULBIO-PWY	L-citrulline biosynthesis	8	8	100.0
CITRULLINE-DEG-PWY	L-citrulline degradation	2	2	100.0
COA-PWY	Coenzyme A biosynthesis I CoA biosynthesis	3	4	75.0
COA-PWY-1	Coenzyme A biosynthesis II (mammalian) CoA biosynthesis	4	5	80.0
COBALSYN-PWY	Adenosylcobalamin salvage from cobinamide I Vitamin B12 biosynthesis	1	6	17.0
CODH-PWY	Reductive acetyl coenzyme A pathway I (homoacetogenic bacteria) Wood pathway Acetate synthesis Acetyl-CoA pathway Carbon monoxide dehydrogenase pathway Carbon fixation CO2 fixation Ljungdahl-Wood pathway Wood-Ljungdahl pathway Reductive acetyl CoA pathway	5	9	56.0
COLANSYN-PWY	Colanic acid building blocks biosynthesis	6	11	55.0
CRNFORCAT-PWY	Creatinine degradation I Creatinine catabolism	1	4	25.0
CYANCAT-PWY	Cyanate degradation Cyanate catabolism	2	3	67.0
CYSTEINE-DEG-PWY	L-cysteine degradation I Cysteine degradation I	2	3	67.0
CYSTSYN-PWY	L-cysteine biosynthesis I	2	2	100.0
DAPLYSINESYN-PWY	L-lysine biosynthesis I L-lysine and L-diaminopimelate biosynthesis	6	9	67.0
DARABCATK12-PWY	D-arabinose degradation I D-arabinose catabolism	1	4	25.0
... further results

@@ Line 1: / Line 1: @@
-[[Category:Gene]]
+{{#ask: [[Category:Pathway]]
-== Gene Ec-10_002430 ==
+| ?common name
-* left end position:
+| ?reaction found
-** 2550725
+| ?total reaction
-* transcription direction:
+| ?completion rate
-** NEGATIVE
+}}
-* right end position:
-** 2552584
-* centisome position:
-** 39.235977
-* Synonym(s):
-** Esi_0185_0036
-** Esi0185_0036
-** SirB
-== Reactions associated ==
-* Reaction: [[4.99.1.3-RXN]]
-** Source: [[annotation-esiliculosus_genome]]
-*** Assignment: go-term
-* Reaction: [[RXN-8759]]
-** Source: [[annotation-esiliculosus_genome]]
-*** Assignment: go-term
-* Reaction: [[SIROHEME-FERROCHELAT-RXN]]
-** Source: [[annotation-esiliculosus_genome]]
-*** Assignment: ec-number
-== Pathways associated ==
-* [[PWY-7377]]
-* [[PWY-5194]]
-== External links  ==
-{{#set: left end position=2550725}}
-{{#set: transcription direction=NEGATIVE}}
-{{#set: right end position=2552584}}
-{{#set: centisome position=39.235977    }}
-{{#set: common name=Esi_0185_0036|Esi0185_0036|SirB}}
-{{#set: reaction associated=4.99.1.3-RXN|RXN-8759|SIROHEME-FERROCHELAT-RXN}}
-{{#set: pathway associated=PWY-7377|PWY-5194}}

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