Difference between revisions of "Ec-01 002340"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** PLP-b...")
(Created page with "Category:Gene == Gene Ec-01_002340 == * left end position: ** 1962618 * transcription direction: ** NEGATIVE * right end position: ** 1967787 * centisome position: ** 19.0...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
+
== Gene Ec-01_002340 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 1962618
−
* common name:
+
* transcription direction:
−
** PLP-binding barrel
+
** NEGATIVE
−
* ec number:
+
* right end position:
−
** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
+
** 1967787
 +
* centisome position:
 +
** 19.019764   
 
* Synonym(s):
 
* Synonym(s):
 +
** Esi_0003_0065
 +
** Esi0003_0065
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[1.11.1.15-RXN]]
−
** 1 [[PROTON]][c] '''+''' 1 [[MESO-DIAMINOPIMELATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
+
−
* With common name(s):
+
−
** 1 H+[c] '''+''' 1 meso-diaminopimelate[c] '''=>''' 1 CO2[c] '''+''' 1 L-lysine[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* Gene: [[Ec-01_000060]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: go-term
−
* Gene: [[Ec-09_002360]]
+
* Reaction: [[RXN0-5468]]
−
** Source: [[orthology-aragem]]
+
−
* Gene: [[Ec-09_002410]]
+
−
** Source: [[orthology-aragem]]
+
−
* Gene: [[Ec-09_002420]]
+
−
** Source: [[orthology-aragem]]
+
−
== Pathways  ==
+
−
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
+
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-aragem]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: go-term
 +
== Pathways associated ==
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: left end position=1962618}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
+
{{#set: transcription direction=NEGATIVE}}
−
* LIGAND-RXN:
+
{{#set: right end position=1967787}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
+
{{#set: centisome position=19.019764    }}
−
* UNIPROT:
+
{{#set: common name=Esi_0003_0065|Esi0003_0065}}
−
** [http://www.uniprot.org/uniprot/P19572 P19572]
+
{{#set: reaction associated=1.11.1.15-RXN|RXN0-5468}}
−
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
+
−
** [http://www.uniprot.org/uniprot/P44316 P44316]
+
−
** [http://www.uniprot.org/uniprot/P56129 P56129]
+
−
** [http://www.uniprot.org/uniprot/O67262 O67262]
+
−
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
+
−
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
+
−
** [http://www.uniprot.org/uniprot/P00861 P00861]
+
−
** [http://www.uniprot.org/uniprot/O27390 O27390]
+
−
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
+
−
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
+
−
** [http://www.uniprot.org/uniprot/O29458 O29458]
+
−
** [http://www.uniprot.org/uniprot/P41023 P41023]
+
−
** [http://www.uniprot.org/uniprot/P23630 P23630]
+
−
** [http://www.uniprot.org/uniprot/P09890 P09890]
+
−
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
+
−
** [http://www.uniprot.org/uniprot/O05321 O05321]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=PLP-binding barrel}}
+
−
{{#set: ec number=EC-4.1.1.20}}
+
−
{{#set: gene associated=Ec-01_000060|Ec-09_002360|Ec-09_002410|Ec-09_002420}}
+
−
{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:33, 21 March 2018

Gene Ec-01_002340

  • left end position:
    • 1962618
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 1967787
  • centisome position:
    • 19.019764
  • Synonym(s):
    • Esi_0003_0065
    • Esi0003_0065

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-01_002340&oldid=27772"