Difference between revisions of "Ec-04 004690"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GTP...")
 
(Created page with "Category:Gene == Gene Ec-04_004690 == * left end position: ** 4710646 * transcription direction: ** POSITIVE * right end position: ** 4727401 * centisome position: ** 72.3...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GTP-CYCLOHYDRO-II-RXN GTP-CYCLOHYDRO-II-RXN] ==
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== Gene Ec-04_004690 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 4710646
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* common name:
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* transcription direction:
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** GTP cyclohydrolase II
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/3.5.4.25 EC-3.5.4.25]
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** 4727401
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* centisome position:
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** 72.339584   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0037_0140
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** Esi0037_0140
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PEROXID-RXN]]
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** 3 [[WATER]][c] '''+''' 1 [[GTP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[FORMATE]][c] '''+''' 2 [[PROTON]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: go-term
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** 3 H2O[c] '''+''' 1 GTP[c] '''=>''' 1 diphosphate[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''+''' 1 formate[c] '''+''' 2 H+[c]
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* Reaction: [[RXN-11329]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-14240]]
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* [[Ec-02_005710]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: go-term
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***GO-TERM
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* Reaction: [[RXN-15288]]
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** [[pantograph]]-[[aragem]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[Ec-27_004040]]
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*** Assignment: go-term
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** [[pantograph]]-[[aragem]]
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* Reaction: [[RXN-17352]]
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== Pathways  ==
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** Source: [[annotation-esiliculosus_genome]]
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* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
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*** Assignment: go-term
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* Reaction: [[RXN-8635]]
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* [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168]
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** Source: [[annotation-esiliculosus_genome]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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*** Assignment: go-term
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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== Pathways associated ==
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7214]]
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== Reconstruction information  ==
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* [[PWY-6824]]
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* [[orthology]]:
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* [[PWY-7445]]
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** [[pantograph]]:
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* [[PWY-5469]]
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*** [[aragem]]
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* [[PWY-5466]]
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* [[annotation]]:
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* [[PWY-5461]]
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** [[pathwaytools]]:
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: left end position=4710646}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
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{{#set: transcription direction=POSITIVE}}
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* UNIPROT:
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{{#set: right end position=4727401}}
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** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
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{{#set: centisome position=72.339584    }}
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** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
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{{#set: common name=Esi_0037_0140|Esi0037_0140}}
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** [http://www.uniprot.org/uniprot/O08315 O08315]
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{{#set: reaction associated=PEROXID-RXN|RXN-11329|RXN-14240|RXN-15288|RXN-17352|RXN-8635}}
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** [http://www.uniprot.org/uniprot/O66679 O66679]
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{{#set: pathway associated=PWY-7214|PWY-6824|PWY-7445|PWY-5469|PWY-5466|PWY-5461}}
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** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
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** [http://www.uniprot.org/uniprot/O25484 O25484]
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** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
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** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
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** [http://www.uniprot.org/uniprot/P43525 P43525]
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** [http://www.uniprot.org/uniprot/P17620 P17620]
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** [http://www.uniprot.org/uniprot/P38066 P38066]
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** [http://www.uniprot.org/uniprot/P50139 P50139]
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** [http://www.uniprot.org/uniprot/P74104 P74104]
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** [http://www.uniprot.org/uniprot/O24019 O24019]
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** [http://www.uniprot.org/uniprot/P51695 P51695]
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** [http://www.uniprot.org/uniprot/P50855 P50855]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=GTP cyclohydrolase II}}
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{{#set: ec number=EC-3.5.4.25}}
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{{#set: gene associated=Ec-02_005710|Ec-27_004040}}
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{{#set: in pathway=PWY-7539|PWY-6168|RIBOSYN2-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Latest revision as of 20:35, 21 March 2018

Gene Ec-04_004690

  • left end position:
    • 4710646
  • transcription direction:
    • POSITIVE
  • right end position:
    • 4727401
  • centisome position:
    • 72.339584
  • Synonym(s):
    • Esi_0037_0140
    • Esi0037_0140

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-04_004690&oldid=27944"