Difference between revisions of "Ec-06 002940"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOMEVALONATE-KINASE-RXN PHOSPHOMEVALONATE-KINASE-RXN] == * direction: ** REVERSIBLE * common n...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOMEVALONATE-KINASE-RXN PHOSPHOMEVALONATE-KINASE-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** flavonoid biosynthesis
+
** GHMP kinase, C-terminal domain
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.4.2 EC-2.7.4.2]
 
* Synonym(s):
 
* Synonym(s):
−
** flavonoid biosynthesis
 
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''5''' reactions found over '''5''' reactions in the full pathway
+
* With identifiers:
−
* [[4-COUMARATE--COA-LIGASE-RXN]]
+
** 1 [[CPD-499]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[CPD-641]][c] '''+''' 1 [[ADP]][c]
−
** 2 associated gene(s):
+
* With common name(s):
−
*** [[Ec-04_001280]]
+
** 1 (R)-mevalonate 5-phosphate[c] '''+''' 1 ATP[c] '''<=>''' 1 (R)-mevalonate diphosphate[c] '''+''' 1 ADP[c]
−
*** [[Ec-10_001480]]
+
 
−
** 1 reconstruction source(s) associated:
+
== Genes associated with this reaction  ==
−
*** [[orthology-aragem]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[APIGNAR-RXN]]
+
* Gene: [[Ec-25_002910]]
−
** 2 associated gene(s):
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-00_005930]]
+
*** Assignment: EC-NUMBER
−
*** [[Ec-05_001880]]
+
** Source: [[orthology-aragem]]
−
** 1 reconstruction source(s) associated:
+
== Pathways  ==
−
*** [[orthology-aragem]]
+
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
−
* [[NARINGENIN-3-DIOXYGENASE-RXN]]
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
** 3 associated gene(s):
+
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
−
*** [[Ec-19_002760]]
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
*** [[Ec-08_003510]]
+
== Reconstruction information  ==
−
*** [[Ec-19_002750]]
+
* Category: [[orthology]]
−
** 1 reconstruction source(s) associated:
+
** Source: [[orthology-aragem]]
−
*** [[orthology-aragem]]
+
*** Tool: [[pantograph]]
−
* [[NARINGENIN-CHALCONE-SYNTHASE-RXN]]
+
* Category: [[annotation]]
−
** 3 associated gene(s):
+
** Source: [[annotation-esiliculosus_genome]]
−
*** [[Ec-07_003670]]
+
*** Tool: [[pathwaytools]]
−
*** [[Ec-07_006660]]
+
−
*** [[Ec-02_004580]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-aragem]]
+
−
* [[RXN-3142]]
+
−
** 1 associated gene(s):
+
−
*** [[Ec-03_003520]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[orthology-aragem]]
+
−
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
−
* ARACYC:
+
* RHEA:
−
** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16341 16341]
−
{{#set: taxonomic range=TAX-58024}}
+
* LIGAND-RXN:
−
{{#set: common name=flavonoid biosynthesis}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03245 R03245]
−
{{#set: common name=flavonoid biosynthesis}}
+
* UNIPROT:
−
{{#set: reaction found=5}}
+
** [http://www.uniprot.org/uniprot/P24521 P24521]
−
{{#set: total reaction=5}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: completion rate=100.0}}
+
{{#set: common name=GHMP kinase, C-terminal domain}}
 +
{{#set: ec number=EC-2.7.4.2}}
 +
{{#set: gene associated=Ec-25_002910}}
 +
{{#set: in pathway=PWY-922|PWY-7391}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:16, 21 March 2018

Reaction PHOSPHOMEVALONATE-KINASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • GHMP kinase, C-terminal domain
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (R)-mevalonate 5-phosphate[c] + 1 ATP[c] <=> 1 (R)-mevalonate diphosphate[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-922, mevalonate pathway I: PWY-922
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 7 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-06_002940&oldid=17159"