Difference between revisions of "Ec-25 000020"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-330...")
(Created page with "Category:Gene == Gene Ec-25_000020 == * left end position: ** 29817 * transcription direction: ** POSITIVE * right end position: ** 37551 * centisome position: ** 0.669903...")
 
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[[Category:Pathway]]
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[[Category:Gene]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735] ==
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== Gene Ec-25_000020 ==
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* taxonomic range:
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* left end position:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** 29817
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* common name:
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* transcription direction:
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** jasmonic acid biosynthesis
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** POSITIVE
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* right end position:
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** 37551
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* centisome position:
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** 0.66990376   
 
* Synonym(s):
 
* Synonym(s):
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** jasmonate biosynthesis
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** Esi_0322_0005
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** Esi0322_0005
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** GCSL
  
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== Reaction(s) found ==
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== Reactions associated ==
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'''10''' reactions found over '''19''' reactions in the full pathway
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* Reaction: [[1.8.1.4-RXN]]
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* [[RXN-10696]]
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** Source: [[annotation-esiliculosus_genome]]
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** 3 associated gene(s):
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*** Assignment: ec-number
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*** [[Ec-22_002920]]
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* Reaction: [[2-KETO-ADIPATE-DEHYDROG-RXN]]
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*** [[Ec-26_004320]]
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** Source: [[orthology-aragem]]
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*** [[Ec-08_006390]]
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* Reaction: [[2OXOGLUTARATEDEH-RXN]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-esiliculosus_genome]]
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*** [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* [[RXN-10697]]
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* Reaction: [[2OXOGLUTDECARB-RXN]]
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** 4 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-06_001380]]
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*** Assignment: automated-name-match
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*** [[Ec-16_003560]]
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* Reaction: [[PYRUVDEH-RXN]]
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*** [[Ec-16_001250]]
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** Source: [[orthology-aragem]]
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*** [[Ec-14_006530]]
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** Source: [[orthology-aragem]]
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** 1 reconstruction source(s) associated:
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* Reaction: [[RXN-7716]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-10698]]
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*** Assignment: ec-number
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** 2 associated gene(s):
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* Reaction: [[RXN-7719]]
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*** [[Ec-19_005290]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-14_006530]]
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*** Assignment: ec-number
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** 1 reconstruction source(s) associated:
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* Reaction: [[RXN-8629]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-10702]]
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*** Assignment: ec-number
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** 2 associated gene(s):
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* Reaction: [[RXN0-1132]]
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*** [[Ec-19_005290]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-14_006530]]
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*** Assignment: ec-number
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** 1 reconstruction source(s) associated:
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* Reaction: [[RXN0-1147]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[RXN-10703]]
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*** Assignment: automated-name-match
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** 2 associated gene(s):
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== Pathways associated ==
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*** [[Ec-14_006530]]
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* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]]
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*** [[Ec-19_005290]]
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* [[GLYCLEAV-PWY]]
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** 1 reconstruction source(s) associated:
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* [[PYRUVDEHYD-PWY]]
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-7218]]
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* [[RXN-10704]]
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* [[PWY-5537]]
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** 4 associated gene(s):
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* [[PWY-7384]]
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*** [[Ec-14_006530]]
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* [[PWY-5046]]
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*** [[Ec-16_001250]]
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* [[PWY-6886]]
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*** [[Ec-16_003560]]
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* [[PWY-5084]]
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*** [[Ec-06_001380]]
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* [[LYSINE-DEG1-PWY]]
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** 1 reconstruction source(s) associated:
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* [[PWY-7254]]
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-5652]]
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* [[RXN-10705]]
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* [[PWY-5690]]
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** 4 associated gene(s):
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* [[PWY-5482]]
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*** [[Ec-16_003560]]
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* [[PWY66-425]]
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*** [[Ec-16_001250]]
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* [[PWY66-398]]
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*** [[Ec-06_001380]]
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* [[TCA]]
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*** [[Ec-14_006530]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-10706]]
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** 3 associated gene(s):
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*** [[Ec-08_006390]]
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*** [[Ec-26_004320]]
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*** [[Ec-22_002920]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-10707]]
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** 3 associated gene(s):
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*** [[Ec-26_004320]]
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*** [[Ec-22_002920]]
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*** [[Ec-08_006390]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-1321]]
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** 4 associated gene(s):
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*** [[Ec-03_000010]]
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*** [[Ec-03_000020]]
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*** [[Ec-20_003620]]
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*** [[Ec-20_003630]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=12-OXOPHYTODIENOATE-REDUCTASE-RXN 12-OXOPHYTODIENOATE-REDUCTASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=ALLENE-OXIDE-CYCLASE-RXN ALLENE-OXIDE-CYCLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10695 RXN-10695]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10699 RXN-10699]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10700 RXN-10700]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10701 RXN-10701]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10708 RXN-10708]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-745 RXN-745]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-19 RXN1F-19]
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== External links  ==
 
== External links  ==
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* ARACYC:
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{{#set: left end position=29817}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-735 PWY-735]
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{{#set: transcription direction=POSITIVE}}
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{{#set: taxonomic range=TAX-33090}}
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{{#set: right end position=37551}}
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{{#set: common name=jasmonic acid biosynthesis}}
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{{#set: centisome position=0.66990376    }}
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{{#set: common name=jasmonate biosynthesis}}
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{{#set: common name=Esi_0322_0005|Esi0322_0005|GCSL}}
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{{#set: reaction found=10}}
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{{#set: reaction associated=1.8.1.4-RXN|2-KETO-ADIPATE-DEHYDROG-RXN|2OXOGLUTARATEDEH-RXN|2OXOGLUTDECARB-RXN|PYRUVDEH-RXN|RXN-7716|RXN-7719|RXN-8629|RXN0-1132|RXN0-1147}}
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{{#set: total reaction=19}}
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{{#set: pathway associated=GLYCOLYSIS-TCA-GLYOX-BYPASS|GLYCLEAV-PWY|PYRUVDEHYD-PWY|PWY-7218|PWY-5537|PWY-7384|PWY-5046|PWY-6886|PWY-5084|LYSINE-DEG1-PWY|PWY-7254|PWY-5652|PWY-5690|PWY-5482|PWY66-425|PWY66-398|TCA}}
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{{#set: completion rate=53.0}}
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Latest revision as of 20:25, 21 March 2018

Gene Ec-25_000020

  • left end position:
    • 29817
  • transcription direction:
    • POSITIVE
  • right end position:
    • 37551
  • centisome position:
    • 0.66990376
  • Synonym(s):
    • Esi_0322_0005
    • Esi0322_0005
    • GCSL

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=Ec-25_000020&oldid=26753"