Difference between revisions of "Exchange BIOMASS"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.151-RXN 2.4.1.151-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** galactosyltransfera...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=Exchange_BIOMASS Exchange_BIOMASS] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Form...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.151-RXN 2.4.1.151-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=Exchange_BIOMASS Exchange_BIOMASS] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
* common name:
 
** galactosyltransferase
 
* ec number:
 
** [http://enzyme.expasy.org/EC/2.4.1.87 EC-2.4.1.87]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[CPD-14553]][c] '''+''' 1 [[B-Gal-14-NacGlc-R]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[UDP]][c] '''+''' 1 [[ALPHA-D-GALACTOSYL-ETCETERA-GLUCOSAMINYL]][c]
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** 1 [[BIOMASS]][e] '''=>''' 1 [[BIOMASS]][C-BOUNDARY]
 
* With common name(s):
 
* With common name(s):
** 1 UDP-α-D-galactose[c] '''+''' 1 β-D-galactosyl-(1→4)-N-acetyl-β-D-glucosaminyl-R[c] '''=>''' 1 H+[c] '''+''' 1 UDP[c] '''+''' 1 α-D-galactosyl-(1,3)-β-D-galactosyl-(1,4)-N-acetyl-D-glucosaminyl-R[c]
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**
 
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== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
Genes have been associated with this reaction based on different elements listed below.
 
* Gene: [[Ec-03_002280]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
* Gene: [[Ec-00_004510]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
* Gene: [[Ec-26_000190]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
* Gene: [[Ec-08_004370]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
* Gene: [[Ec-01_006680]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
* Gene: [[Ec-14_005280]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
* Gene: [[Ec-24_000030]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: GO-TERM
 
 
== Pathways  ==
 
== Pathways  ==
* [[PWY-7434]], terminal O-glycans residues modification: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7434 PWY-7434]
 
** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* Category: [[annotation]]
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* Category: [[manual]]
** Source: [[annotation-esiliculosus_genome]]
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** Source: [[manual-2_biomass_rxn]]
*** Tool: [[pathwaytools]]
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*** Comment: [[exchange biomass to boundary]]
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13013 13013]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R02791 R02791]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/Q28855 Q28855]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: common name=galactosyltransferase}}
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{{#set: in pathway=}}
{{#set: ec number=EC-2.4.1.87}}
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{{#set: reconstruction category=manual}}
{{#set: gene associated=Ec-03_002280|Ec-00_004510|Ec-26_000190|Ec-08_004370|Ec-01_006680|Ec-14_005280|Ec-24_000030}}
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{{#set: reconstruction source=manual-2_biomass_rxn}}
{{#set: in pathway=PWY-7434}}
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{{#set: reconstruction comment=exchange biomass to boundary}}
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:11, 21 March 2018

Reaction Exchange_BIOMASS

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):

Genes associated with this reaction

Pathways

Reconstruction information

External links