Difference between revisions of "GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56."

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11662 RXN-11662] == * direction: ** REVERSIBLE * common name: ** 6-phosphogluconate dehydrogena...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56. GCVMULTI-RXN-GLY/THF/NAD//...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11662 RXN-11662] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56. GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56.] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** 6-phosphogluconate dehydrogenase, C-terminal-like
 
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** 3-hydroxyacyl-CoA dehydrogenase
 
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[S-3-HYDROXYBUTANOYL-COA]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ACETOACETYL-COA]][c]
+
** 1.0 [[NAD]][c] '''+''' 1.0 [[THF]][c] '''+''' 1.0 [[GLY]][c] '''<=>''' 1.0 [[NADH]][c] '''+''' 1.0 [[AMMONIUM]][c] '''+''' 1.0 [[METHYLENE-THF]][c] '''+''' 1.0 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (S)-3-hydroxybutanoyl-CoA[c] '''+''' 1 NAD+[c] '''<=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 acetoacetyl-CoA[c]
+
** 1.0 NAD+[c] '''+''' 1.0 tetrahydropteroyl mono-L-glutamate[c] '''+''' 1.0 glycine[c] '''<=>''' 1.0 NADH[c] '''+''' 1.0 ammonium[c] '''+''' 1.0 5,10-methylenetetrahydropteroyl mono-L-glutamate[c] '''+''' 1.0 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-14_006530]]
 
−
** ESILICULOSUS_GENOME
 
−
***GO-TERM
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-19_005290]]
 
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** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
 
−
** '''4''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7216 PWY-7216]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5177]], glutaryl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5177 PWY-5177]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6883]], pyruvate fermentation to butanol II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6883 PWY-6883]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7401]], crotonate fermentation (to acetate and cyclohexane carboxylate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7401 PWY-7401]
 
−
** '''4''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-7778]], 2-methylpropene degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7778 PWY-7778]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7779]], methyl tert-butyl ether degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7779 PWY-7779]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
 
−
** '''6''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[aragem]]
+
*** Tool: [[meneco]]
−
* [[annotation]]:
+
**** Comment: [[added for gapfilling]]
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30799 30799]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01975 R01975]
 
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=6-phosphogluconate dehydrogenase, C-terminal-like}}
+
{{#set: in pathway=}}
−
{{#set: common name=3-hydroxyacyl-CoA dehydrogenase}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: ec number=EC-1.1.1.35}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: gene associated=Ec-14_006530|Ec-19_005290}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: in pathway=P162-PWY|PWY-7216|CENTFERM-PWY|PWY-5177|PWY-6583|PWY-6883|PWY-7401|PWY-7778|PWY-7779|PWY-5789|PWY-6863}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=aragem}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Latest revision as of 20:35, 21 March 2018

Reaction GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56.

  • direction:
    • REVERSIBLE
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 NAD+[c] + 1.0 tetrahydropteroyl mono-L-glutamate[c] + 1.0 glycine[c] <=> 1.0 NADH[c] + 1.0 ammonium[c] + 1.0 5,10-methylenetetrahydropteroyl mono-L-glutamate[c] + 1.0 CO2[c]

Genes associated with this reaction

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56.&oldid=27970"