Difference between revisions of "H2NEOPTERINALDOL-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN] == * direction: ** LEFT-TO-R...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2NEOPTERINALDOL-RXN H2NEOPTERINALDOL-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://en...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=H2NEOPTERINALDOL-RXN H2NEOPTERINALDOL-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.1 EC-3.6.1]
+
** [http://enzyme.expasy.org/EC/4.1.2.25 EC-4.1.2.25]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DIHYDRONEOPTERIN-P]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[DIHYDRO-NEO-PTERIN]][c]
+
** 1 [[DIHYDRO-NEO-PTERIN]][c] '''<=>''' 1 [[AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE]][c] '''+''' 1 [[GLYCOLALDEHYDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 7,8-dihydroneopterin 3'-phosphate[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 7,8-dihydroneopterin[c]
+
** 1 7,8-dihydroneopterin[c] '''<=>''' 1 6-(hydroxymethyl)-7,8-dihydropterin[c] '''+''' 1 glycolaldehyde[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* Gene: [[Ec-18_000740]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-12_006470]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-00_002040]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-06_010060]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-04_000920]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-15_003300]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-06_009970]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-01_000090]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-05_006830]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-12_001230]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-10_002470]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-15_000350]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-06_007890]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-10_002170]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-09_003740]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-19_001450]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-24_003120]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-14_006830]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-19_001540]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-15_000660]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-19_001310]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-09_003200]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-01_009100]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-15_001630]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-19_003700]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-14_006970]]
 
−
** Source: [[orthology-aragem]]
 
−
* Gene: [[Ec-22_000120]]
 
−
** Source: [[orthology-aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
 
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
 
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7539 PWY-7539]
 
** '''4''' reactions found over '''5''' reactions in the full pathway
 
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6148]], tetrahydromethanopterin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6148 PWY-6148]
 +
** '''2''' reactions found over '''14''' reactions in the full pathway
 
* [[PWY-6797]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6797 PWY-6797]
 
* [[PWY-6797]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6797 PWY-6797]
 
** '''3''' reactions found over '''7''' reactions in the full pathway
 
** '''3''' reactions found over '''7''' reactions in the full pathway
Line 77: Line 24:
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[gap-filling]]
−
** Source: [[orthology-aragem]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[meneco]]
 +
**** Comment: [[added for gapfilling]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25306 25306]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10540 10540]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04621 R04621]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03504 R03504]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: ec number=EC-3.6.1}}
+
** [http://www.uniprot.org/uniprot/P22291 P22291]
−
{{#set: gene associated=Ec-18_000740|Ec-12_006470|Ec-00_002040|Ec-06_010060|Ec-04_000920|Ec-15_003300|Ec-06_009970|Ec-01_000090|Ec-05_006830|Ec-12_001230|Ec-10_002470|Ec-15_000350|Ec-06_007890|Ec-10_002170|Ec-09_003740|Ec-19_001450|Ec-24_003120|Ec-14_006830|Ec-19_001540|Ec-15_000660|Ec-19_001310|Ec-09_003200|Ec-01_009100|Ec-15_001630|Ec-19_003700|Ec-14_006970|Ec-22_000120}}
+
** [http://www.uniprot.org/uniprot/Q9CGE4 Q9CGE4]
−
{{#set: in pathway=PWY-7539|PWY-6797|PWY-6147}}
+
** [http://www.uniprot.org/uniprot/Q9JUL3 Q9JUL3]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P28823 P28823]
−
{{#set: reconstruction source=orthology-aragem}}
+
** [http://www.uniprot.org/uniprot/P29251 P29251]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P53848 P53848]
 +
** [http://www.uniprot.org/uniprot/O75013 O75013]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-4.1.2.25}}
 +
{{#set: in pathway=PWY-7539|PWY-6148|PWY-6797|PWY-6147}}
 +
{{#set: reconstruction category=gap-filling}}
 +
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
 +
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}

Latest revision as of 20:33, 21 March 2018

Reaction H2NEOPTERINALDOL-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia): PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6148, tetrahydromethanopterin biosynthesis: PWY-6148
    • 2 reactions found over 14 reactions in the full pathway
  • PWY-6797, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea): PWY-6797
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6147, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I: PWY-6147
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links




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