Difference between revisions of "Manual"

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(Created page with "Category:Gene == Gene Ec-01_001560 == * left end position: ** 1238089 * transcription direction: ** POSITIVE * right end position: ** 1252991 * centisome position: ** 11.9...")
(Created page with "{{#ask: Category:Reaction reconstruction category::manual | ?common name | ?ec number | ?reconstruction category | ?reconstruction tool | ?reconstruction source | ?rec...")
 
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[[Category:Gene]]
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{{#ask: [[Category:Reaction]] [[reconstruction category::manual]]
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== Gene Ec-01_001560 ==
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| ?common name
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* left end position:
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| ?ec number
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** 1238089
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| ?reconstruction category
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* transcription direction:
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| ?reconstruction tool
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** POSITIVE
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| ?reconstruction source
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* right end position:
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| ?reconstruction comment
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** 1252991
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| ?gene associated
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* centisome position:
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| ?in pathway
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** 11.998342   
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}}
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* Synonym(s):
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** Esi_0112_0021
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** Esi0112_0021
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** LACS
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== Reactions associated ==
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* Reaction: [[ACYLCOASYN-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[LINOLENOYL-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[R223-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-12184]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-12978]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-13290]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-13614]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16380]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16389]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16393]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16401]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16402]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16415]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-16418]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-7904]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9623]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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** Source: [[orthology-aragem]]
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* Reaction: [[RXN-9644]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-9673]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-7238]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-7239]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN0-7248]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN66-469]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN66-477]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN66-480]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN66-483]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN66-484]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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* Reaction: [[TRANS-RXN0-623]]
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** Source: [[annotation-esiliculosus_genome]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-6920]]
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* [[P221-PWY]]
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* [[PWY-321]]
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* [[PWY-5972]]
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* [[PWY-5971]]
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* [[PWY-7033]]
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* [[PWY-5136]]
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* [[PWY66-389]]
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* [[PWY-7288]]
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* [[PWY-6733]]
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* [[PWY-7094]]
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* [[PWY66-391]]
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* [[FAO-PWY]]
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* [[PWY-1121]]
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* [[PWY-6873]]
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* [[PWY-5147]]
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* [[PWY-5143]]
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* [[PWY-5885]]
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* [[PWY-7724]]
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* [[PWY-6001]]
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* [[PWY-6000]]
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* [[PWY-7049]]
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* [[PWY66-387]]
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* [[PWY-5989]]
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* [[PWY-6803]]
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* [[PWY66-388]]
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== External links  ==
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{{#set: left end position=1238089}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: right end position=1252991}}
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{{#set: centisome position=11.998342    }}
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{{#set: common name=Esi_0112_0021|Esi0112_0021|LACS}}
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{{#set: reaction associated=ACYLCOASYN-RXN|LINOLENOYL-RXN|R223-RXN|RXN-12184|RXN-12978|RXN-13290|RXN-13614|RXN-16380|RXN-16389|RXN-16393|RXN-16401|RXN-16402|RXN-16415|RXN-16418|RXN-7904|RXN-9623|RXN-9644|RXN-9673|RXN0-7238|RXN0-7239|RXN0-7248|RXN66-469|RXN66-477|RXN66-480|RXN66-483|RXN66-484|TRANS-RXN0-623}}
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{{#set: pathway associated=PWY-6920|P221-PWY|PWY-321|PWY-5972|PWY-5971|PWY-7033|PWY-5136|PWY66-389|PWY-7288|PWY-6733|PWY-7094|PWY66-391|FAO-PWY|PWY-1121|PWY-6873|PWY-5147|PWY-5143|PWY-5885|PWY-7724|PWY-6001|PWY-6000|PWY-7049|PWY66-387|PWY-5989|PWY-6803|PWY66-388}}
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Latest revision as of 21:02, 21 March 2018

 Common nameEc numberReconstruction categoryReconstruction toolReconstruction sourceReconstruction commentGene associatedIn pathway
Biomass rxnManualManual-2 biomass rxnForfbaNone
Exchange BIOMASSManualManual-2 biomass rxnExchange biomass to boundary
ExchangeSeed ADENOSYLCOBALAMINManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed AMMONIAManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed BIOTINManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CA+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CARBON-DIOXIDEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CL-ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CO+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed COB-I-ALAMINManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CPD-3ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CPD-315ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CU+ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CU+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed EDTAManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed FE+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed FE+3ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed K+ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed LightManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed MG+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed MN+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed NA+ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed NITRATEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed OXYGEN-MOLECULEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed PROTONManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed SULFATEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed THIAMINEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed WATERManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed ZN+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
R07063ManualManual-1 keggrxns to addReaction from kegg for the production of cpd-8117 (gamma-linolenate)
R07861ManualManual-1 keggrxns to addReaction from kegg for the production of cpd-12653 (stearidonate)
R08184ManualManual-1 keggrxns to addReaction from kegg for the production of docosanoate
R08190ManualManual-1 keggrxns to addReaction from kegg for the production of eicosadienoates
RXN-14146EC-4.1.2ManualManual-2 cycrxns to addReaction added for curationEc-11 002460
RXN-1501 METACYC18.5ManualManual-1 cycrxns to addReaction from metacyc 18.5 to produce linolenic acid. reaction phospholipase-a2-rxn deleted in return because implies linolenic acid compound class onlyEc-21 005150
Ec-04 004650
RXN-15490ManualManual-2 lightrxns to addExchange reaction for light
RXN-8349 PLANTCYCManualManual-1 cycrxns to addReaction from plantcyc20.5
Transport BIOMASSManualManual-2 biomass rxnTransport biomass to external compartment
TransportSeed ADENOSYLCOBALAMINManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed AMMONIAManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed BIOTINManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CA+2ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CARBON-DIOXIDEManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CL-ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CO+2ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed COB-I-ALAMINManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CPD-3ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CPD-315ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CU+ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
TransportSeed CU+2ManualManual-import from mediumAdded to manage seeds from extracellular to cytosol compartment
... further results
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