Difference between revisions of "PEPDEPHOS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** (3R)-3-hydroxybutanoy...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] == * direction: ** REVERSIBLE * common name: ** Pyruvate kinase, alpha...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPDEPHOS-RXN PEPDEPHOS-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
+
** Pyruvate kinase, alpha/beta
 +
** Pyruvate kinase, barrel
 +
** pyruvate kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.7.1.40 EC-2.7.1.40]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
−
** crotonoyl-[acyl-carrier-protein] hydratase
 
−
** β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
 
−
** β-hydroxybutyryl acyl carrier protein dehydrase
 
−
** enoyl acyl carrier protein hydrase
 
−
** crotonyl acyl carrier protein hydratase
 
−
** 3-hydroxybutyryl acyl carrier protein dehydratase
 
−
** β-hydroxybutyryl acyl carrier  protein dehydrase
 
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
 
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[Crotonyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[PYRUVATE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (3R)-3-hydroxybutanoyl-[acp][c] '''=>''' 1 a crotonyl-[acp][c] '''+''' 1 H2O[c]
+
** 1 pyruvate[c] '''+''' 1 ATP[c] '''<=>''' 1 H+[c] '''+''' 1 phosphoenolpyruvate[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Ec-26_004170]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
** Source: [[orthology-aragem]]
 +
** Source: [[orthology-aragem]]
 +
* Gene: [[Ec-06_006860]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Ec-12_000950]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
−
** '''28''' reactions found over '''31''' reactions in the full pathway
+
** '''8''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
−
** '''20''' reactions found over '''31''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
+
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
 +
** '''7''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7383 PWY-7383]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 +
** '''8''' reactions found over '''16''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 +
** '''13''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-aragem]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18157 18157]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00200 R00200]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase}}
+
** [http://www.uniprot.org/uniprot/Q7M034 Q7M034]
−
{{#set: ec number=EC-2.3.1.86}}
+
** [http://www.uniprot.org/uniprot/P11979 P11979]
−
{{#set: ec number=EC-2.3.1.85}}
+
** [http://www.uniprot.org/uniprot/P11980 P11980]
−
{{#set: ec number=EC-4.2.1.59}}
+
** [http://www.uniprot.org/uniprot/Q07637 Q07637]
−
{{#set: common name=crotonoyl-[acyl-carrier-protein] hydratase|&beta;-hydroxybutyryl acyl carrier protein (ACP) dehydrase|&beta;-hydroxybutyryl acyl carrier protein dehydrase|enoyl acyl carrier protein hydrase|crotonyl acyl carrier protein hydratase|3-hydroxybutyryl acyl carrier protein dehydratase|&beta;-hydroxybutyryl acyl carrier  protein dehydrase|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase}}
+
** [http://www.uniprot.org/uniprot/P34038 P34038]
−
{{#set: in pathway=PWY-5971|PWY-5994|PWY-7388}}
+
** [http://www.uniprot.org/uniprot/P43924 P43924]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q57572 Q57572]
−
{{#set: reconstruction source=annotation-esiliculosus_genome}}
+
** [http://www.uniprot.org/uniprot/P0AD61 P0AD61]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P19680 P19680]
 +
** [http://www.uniprot.org/uniprot/Q9PIB0 Q9PIB0]
 +
** [http://www.uniprot.org/uniprot/P80885 P80885]
 +
** [http://www.uniprot.org/uniprot/Q9UYU6 Q9UYU6]
 +
** [http://www.uniprot.org/uniprot/Q9JWX8 Q9JWX8]
 +
** [http://www.uniprot.org/uniprot/P47458 P47458]
 +
** [http://www.uniprot.org/uniprot/Q46078 Q46078]
 +
** [http://www.uniprot.org/uniprot/P30614 P30614]
 +
** [http://www.uniprot.org/uniprot/P22200 P22200]
 +
** [http://www.uniprot.org/uniprot/Q27788 Q27788]
 +
** [http://www.uniprot.org/uniprot/P51182 P51182]
 +
** [http://www.uniprot.org/uniprot/P51181 P51181]
 +
** [http://www.uniprot.org/uniprot/P31865 P31865]
 +
** [http://www.uniprot.org/uniprot/P00549 P00549]
 +
** [http://www.uniprot.org/uniprot/P00548 P00548]
 +
** [http://www.uniprot.org/uniprot/P30613 P30613]
 +
** [http://www.uniprot.org/uniprot/O75758 O75758]
 +
** [http://www.uniprot.org/uniprot/P12928 P12928]
 +
** [http://www.uniprot.org/uniprot/O30853 O30853]
 +
** [http://www.uniprot.org/uniprot/P30615 P30615]
 +
** [http://www.uniprot.org/uniprot/P30616 P30616]
 +
** [http://www.uniprot.org/uniprot/Q02499 Q02499]
 +
** [http://www.uniprot.org/uniprot/P22360 P22360]
 +
** [http://www.uniprot.org/uniprot/P21599 P21599]
 +
** [http://www.uniprot.org/uniprot/P14618 P14618]
 +
** [http://www.uniprot.org/uniprot/Q42954 Q42954]
 +
** [http://www.uniprot.org/uniprot/Q40545 Q40545]
 +
** [http://www.uniprot.org/uniprot/P52480 P52480]
 +
** [http://www.uniprot.org/uniprot/P52489 P52489]
 +
** [http://www.uniprot.org/uniprot/P78031 P78031]
 +
** [http://www.uniprot.org/uniprot/Q55863 Q55863]
 +
** [http://www.uniprot.org/uniprot/P73534 P73534]
 +
** [http://www.uniprot.org/uniprot/O65595 O65595]
 +
** [http://www.uniprot.org/uniprot/Q42806 Q42806]
 +
** [http://www.uniprot.org/uniprot/Q43117 Q43117]
 +
** [http://www.uniprot.org/uniprot/Q10208 Q10208]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=Pyruvate kinase, alpha/beta}}
 +
{{#set: common name=Pyruvate kinase, barrel}}
 +
{{#set: common name=pyruvate kinase}}
 +
{{#set: ec number=EC-2.7.1.40}}
 +
{{#set: gene associated=Ec-26_004170|Ec-06_006860|Ec-12_000950}}
 +
{{#set: in pathway=PWY-1042|P341-PWY|PWY-2221|GLYCOLYSIS|NPGLUCAT-PWY|PWY-7218|PWY-7383|P124-PWY|PWY-6886|PWY-5723|FERMENTATION-PWY|ANAGLYCOLYSIS-PWY|PWY-5484|PWY-6901|PWY-6142|P122-PWY|PWY-7003}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:30, 21 March 2018

Reaction PEPDEPHOS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Pyruvate kinase, alpha/beta
    • Pyruvate kinase, barrel
    • pyruvate kinase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 8 reactions found over 10 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus): P341-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2221, Entner-Doudoroff pathway III (semi-phosphorylative): PWY-2221
    • 5 reactions found over 9 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative): NPGLUCAT-PWY
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered): PWY-7218
    • 7 reactions found over 10 reactions in the full pathway
  • PWY-7383, anaerobic energy metabolism (invertebrates, cytosol): PWY-7383
    • 4 reactions found over 7 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
    • 8 reactions found over 16 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 10 reactions found over 14 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 13 reactions found over 18 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol: PWY-7003
    • 8 reactions found over 10 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PEPDEPHOS-RXN&oldid=27377"