Difference between revisions of "PREPHENATE-TRANSAMINE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] == * direction: ** REVERSIBLE * common nam...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PREPHENATE-TRANSAMINE-RXN PREPHENATE-TRANSAMINE-RXN] == * direction: ** REVERSIBLE * ec number: **...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEHYDROGENASE-RXN GLUTAMATE-DEHYDROGENASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PREPHENATE-TRANSAMINE-RXN PREPHENATE-TRANSAMINE-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
−
* common name:
 
−
** Glutamate dehydrogenase (NAD-dependent)
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.4.1.2 EC-1.4.1.2]
+
** [http://enzyme.expasy.org/EC/2.6.1.79 EC-2.6.1.79]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[AMMONIUM]][c]
+
** 1 [[CPD-659]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[PREPHENATE]][c] '''+''' 1 [[GLT]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 L-glutamate[c] '''+''' 1 H2O[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 ammonium[c]
+
** 1 L-arogenate[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 prephenate[c] '''+''' 1 L-glutamate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-06_008240]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-12_008040]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-06_001980]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMATE-DEG1-PWY GLUTAMATE-DEG1-PWY]
+
* [[PWY-6120]], L-tyrosine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6120 PWY-6120]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
+
* [[PWY-3462]], L-phenylalanine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3462 PWY-3462]
−
** '''11''' reactions found over '''18''' reactions in the full pathway
+
−
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate): [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY]
+
−
** '''4''' reactions found over '''11''' reactions in the full pathway
+
−
* [[PWY-5022]], 4-aminobutanoate degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5022 PWY-5022]
+
−
** '''1''' reactions found over '''7''' reactions in the full pathway
+
−
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate): [http://metacyc.org/META/NEW-IMAGE?object=ALACAT2-PWY ALACAT2-PWY]
+
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7126]], ethylene biosynthesis IV (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7126 PWY-7126]
+
* [[PWY-3461]], L-tyrosine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3461 PWY-3461]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[gap-filling]]
−
** Source: [[orthology-aragem]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[meneco]]
−
* Category: [[annotation]]
+
**** Comment: [[added for gapfilling]]
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15133 15133]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22880 22880]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07276 R07276]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P20016 P20016]
+
−
** [http://www.uniprot.org/uniprot/P28997 P28997]
+
−
** [http://www.uniprot.org/uniprot/P41755 P41755]
+
−
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
+
−
** [http://www.uniprot.org/uniprot/P00365 P00365]
+
−
** [http://www.uniprot.org/uniprot/P93541 P93541]
+
−
** [http://www.uniprot.org/uniprot/P80319 P80319]
+
−
** [http://www.uniprot.org/uniprot/P24295 P24295]
+
−
** [http://www.uniprot.org/uniprot/P27346 P27346]
+
−
** [http://www.uniprot.org/uniprot/P33327 P33327]
+
−
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
+
−
** [http://www.uniprot.org/uniprot/O04937 O04937]
+
−
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
+
−
** [http://www.uniprot.org/uniprot/O74024 O74024]
+
−
** [http://www.uniprot.org/uniprot/O59650 O59650]
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Glutamate dehydrogenase (NAD-dependent)}}
+
{{#set: ec number=EC-2.6.1.79}}
−
{{#set: ec number=EC-1.4.1.2}}
+
{{#set: in pathway=PWY-6120|PWY-3462|PWY-3461}}
−
{{#set: gene associated=Ec-06_008240|Ec-12_008040|Ec-06_001980}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: in pathway=GLUTAMATE-DEG1-PWY|PWY-6728|P162-PWY|PWY-5022|ALACAT2-PWY|PWY-7126}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:07, 21 March 2018

Reaction PREPHENATE-TRANSAMINE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-arogenate[c] + 1 2-oxoglutarate[c] <=> 1 prephenate[c] + 1 L-glutamate[c]

Genes associated with this reaction

Pathways

  • PWY-6120, L-tyrosine biosynthesis III: PWY-6120
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-3462, L-phenylalanine biosynthesis II: PWY-3462
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-3461, L-tyrosine biosynthesis II: PWY-3461
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




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