Difference between revisions of "PWY-1622"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200783 TAX-...")
(Created page with "Category:Gene == Gene Ec-24_003910 == * left end position: ** 4284830 * transcription direction: ** POSITIVE * right end position: ** 4292393 * centisome position: ** 85.9...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Gene]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] ==
+
== Gene Ec-24_003910 ==
−
* taxonomic range:
+
* left end position:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200783 TAX-200783]
+
** 4284830
−
* common name:
+
* transcription direction:
−
** reductive TCA cycle II
+
** POSITIVE
 +
* right end position:
 +
** 4292393
 +
* centisome position:
 +
** 85.90842   
 
* Synonym(s):
 
* Synonym(s):
−
** reductive tricarboxylic acid cycle
+
** Esi_0109_0085
−
** reductive tricarboxylic acid pathway
+
** Esi0109_0085
−
** reductive citric acid cycle
+
−
** reverse citric acid cycle
+
−
** carbon fixation
+
−
** CO2 fixation
+
−
** reductive carboxylic acid cycle
+
  
−
== Reaction(s) found ==
+
== Reactions associated ==
−
'''6''' reactions found over '''12''' reactions in the full pathway
+
* Reaction: [[4OHBENZOATE-OCTAPRENYLTRANSFER-RXN]]
−
* [[ACONITATEDEHYDR-RXN]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 2 associated gene(s):
+
*** Assignment: automated-name-match
−
*** [[Ec-16_001000]]
+
* Reaction: [[GPPSYN-RXN]]
−
*** [[Ec-12_000170]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** 1 reconstruction source(s) associated:
+
*** Assignment: go-term
−
*** [[annotation-esiliculosus_genome]]
+
* Reaction: [[RXN-9003]]
−
* [[ACONITATEHYDR-RXN]]
+
** Source: [[orthology-aragem]]
−
** 2 associated gene(s):
+
* Reaction: [[RXN-9384]]
−
*** [[Ec-12_000170]]
+
** Source: [[orthology-aragem]]
−
*** [[Ec-16_001000]]
+
* Reaction: [[RXN0-5180]]
−
** 1 reconstruction source(s) associated:
+
** Source: [[orthology-aragem]]
−
*** [[annotation-esiliculosus_genome]]
+
== Pathways associated ==
−
* [[FUMHYDR-RXN]]
+
* [[PWY-7736]]
−
** 2 associated gene(s):
+
* [[PWY-7410]]
−
*** [[Ec-23_003460]]
+
* [[PWY-6859]]
−
*** [[Ec-25_001360]]
+
* [[PWY-7709]]
−
** 2 reconstruction source(s) associated:
+
* [[PWY-6383]]
−
*** [[annotation-esiliculosus_genome]]
+
* [[PWY-7235]]
−
*** [[orthology-aragem]]
+
* [[PWY-7182]]
−
* [[MALATE-DEH-RXN]]
+
* [[PWY-6708]]
−
** 2 associated gene(s):
+
* [[PWY-7141]]
−
*** [[Ec-10_006200]]
+
* [[PWY-5123]]
−
*** [[Ec-02_003100]]
+
* [[PWY-5122]]
−
** 2 reconstruction source(s) associated:
+
* [[PWY-7102]]
−
*** [[annotation-esiliculosus_genome]]
+
* [[PWY-7659]]
−
*** [[orthology-aragem]]
+
* [[PWY-5870]]
−
* [[PYRUFLAVREDUCT-RXN]]
+
* [[PWY3O-19]]
−
** 3 associated gene(s):
+
−
*** [[Ec-23_002710]]
+
−
*** [[Ec-15_004230]]
+
−
*** [[Ec-18_003420]]
+
−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
* [[SUCCCOASYN-RXN]]
+
−
** 2 associated gene(s):
+
−
*** [[Ec-10_000030]]
+
−
*** [[Ec-02_001020]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-esiliculosus_genome]]
+
−
*** [[orthology-aragem]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=CITRATE--COA-LIGASE-RXN CITRATE--COA-LIGASE-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=R23-RXN R23-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7929 RXN-7929]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8457 RXN-8457]
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-200783}}
+
{{#set: left end position=4284830}}
−
{{#set: common name=reductive TCA cycle II}}
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: common name=reductive tricarboxylic acid cycle|reductive tricarboxylic acid pathway|reductive citric acid cycle|reverse citric acid cycle|carbon fixation|CO2 fixation|reductive carboxylic acid cycle}}
+
{{#set: right end position=4292393}}
−
{{#set: reaction found=6}}
+
{{#set: centisome position=85.90842    }}
−
{{#set: total reaction=12}}
+
{{#set: common name=Esi_0109_0085|Esi0109_0085}}
−
{{#set: completion rate=50.0}}
+
{{#set: reaction associated=4OHBENZOATE-OCTAPRENYLTRANSFER-RXN|GPPSYN-RXN|RXN-9003|RXN-9384|RXN0-5180}}
 +
{{#set: pathway associated=PWY-7736|PWY-7410|PWY-6859|PWY-7709|PWY-6383|PWY-7235|PWY-7182|PWY-6708|PWY-7141|PWY-5123|PWY-5122|PWY-7102|PWY-7659|PWY-5870|PWY3O-19}}

Revision as of 14:20, 21 March 2018

Gene Ec-24_003910

  • left end position:
    • 4284830
  • transcription direction:
    • POSITIVE
  • right end position:
    • 4292393
  • centisome position:
    • 85.90842
  • Synonym(s):
    • Esi_0109_0085
    • Esi0109_0085

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-1622&oldid=17703"