Difference between revisions of "PWY-5966"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CERAMIDASE-YEAST-RXN CERAMIDASE-YEAST-RXN] == * direction: ** REVERSIBLE * common name: ** Ceramida...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMEPIM-RXN DIAMINOPIMEPIM-RXN] == * direction: ** REVERSIBLE * common name: ** Diaminopimel...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CERAMIDASE-YEAST-RXN CERAMIDASE-YEAST-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMEPIM-RXN DIAMINOPIMEPIM-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** Ceramidase
+
** Diaminopimelate epimerase, DapF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.1.23 EC-3.5.1.23]
+
** [http://enzyme.expasy.org/EC/5.1.1.7 EC-5.1.1.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Alpha-hydroxyphytoceramides]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[2-Hydroxy-Fatty-Acids]][c] '''+''' 1 [[PHYTOSPINGOSINE]][c]
+
** 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (2'R)-2'-hydroxy-phytoceramide[c] '''+''' 1 H2O[c] '''<=>''' 1 a (2R)-2-hydroxy fatty acid[c] '''+''' 1 phytosphingosine[c]
+
** 1 L,L-diaminopimelate[c] '''<=>''' 1 meso-diaminopimelate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Ec-26_006010]]
+
* [[Ec-06_009100]]
 
** ESILICULOSUS_GENOME
 
** ESILICULOSUS_GENOME
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
 +
** [[pantograph]]-[[aragem]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7119]], sphingolipid recycling and degradation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7119 PWY-7119]
+
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
−
** '''4''' reactions found over '''11''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY66-388]], fatty acid &alpha;-oxidation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-388 PWY66-388]
+
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-aragem]]
−
*** [[esiliculosus_genome]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-esiliculosus_genome]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15393 15393]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02735 R02735]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PMD8 Q9PMD8]
 +
** [http://www.uniprot.org/uniprot/Q9JV69 Q9JV69]
 +
** [http://www.uniprot.org/uniprot/P44859 P44859]
 +
** [http://www.uniprot.org/uniprot/Q58519 Q58519]
 +
** [http://www.uniprot.org/uniprot/P0A6K1 P0A6K1]
 +
** [http://www.uniprot.org/uniprot/Q51564 Q51564]
 +
** [http://www.uniprot.org/uniprot/P46814 P46814]
 +
** [http://www.uniprot.org/uniprot/O05322 O05322]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=Ceramidase}}
+
{{#set: common name=Diaminopimelate epimerase, DapF}}
−
{{#set: ec number=EC-3.5.1.23}}
+
{{#set: ec number=EC-5.1.1.7}}
−
{{#set: gene associated=Ec-26_006010}}
+
{{#set: gene associated=Ec-06_009100}}
−
{{#set: in pathway=PWY-7119|PWY66-388}}
+
{{#set: in pathway=PWY-5097|DAPLYSINESYN-PWY|PWY-2941}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
−
{{#set: reconstruction source=esiliculosus_genome}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 21:48, 17 March 2018

Reaction DIAMINOPIMEPIM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Diaminopimelate epimerase, DapF
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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