Difference between revisions of "PWY-5966"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMEPIM-RXN DIAMINOPIMEPIM-RXN] == * direction: ** REVERSIBLE * common name: ** Diaminopimel...")
(Created page with "Category:Gene == Gene Ec-21_001990 == * left end position: ** 3036840 * transcription direction: ** NEGATIVE * right end position: ** 3049270 * centisome position: ** 41.1...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMEPIM-RXN DIAMINOPIMEPIM-RXN] ==
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== Gene Ec-21_001990 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 3036840
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* common name:
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* transcription direction:
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** Diaminopimelate epimerase, DapF
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** NEGATIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/5.1.1.7 EC-5.1.1.7]
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** 3049270
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* centisome position:
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** 41.14893   
 
* Synonym(s):
 
* Synonym(s):
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** Esi_0150_0079
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** Esi0150_0079
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[GALACTONOLACTONASE-RXN]]
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** 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c]
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** Source: [[annotation-esiliculosus_genome]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 L,L-diaminopimelate[c] '''<=>''' 1 meso-diaminopimelate[c]
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* Reaction: [[GLUCONOLACT-RXN]]
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** Source: [[annotation-esiliculosus_genome]]
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== Genes associated with this reaction  ==
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*** Assignment: automated-name-match
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-11152]]
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* [[Ec-06_009100]]
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** Source: [[annotation-esiliculosus_genome]]
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** ESILICULOSUS_GENOME
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*** Assignment: automated-name-match
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***EC-NUMBER
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* Reaction: [[RXN-8783]]
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** [[pantograph]]-[[aragem]]
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== Pathways  ==
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* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-aragem]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[PWY-2221]]
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* [[PWY-6415]]
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* [[PWY-7165]]
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* [[NPGLUCAT-PWY]]
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* [[GLUCOSE1PMETAB-PWY]]
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* [[PWY3DJ-35471]]
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* [[GALDEG-PWY]]
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* [[PWY-5530]]
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* [[DHGLUCONATE-PYR-CAT-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=3036840}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15393 15393]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=3049270}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02735 R02735]
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{{#set: centisome position=41.14893    }}
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* UNIPROT:
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{{#set: common name=Esi_0150_0079|Esi0150_0079}}
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** [http://www.uniprot.org/uniprot/Q9PMD8 Q9PMD8]
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{{#set: reaction associated=GALACTONOLACTONASE-RXN|GLUCONOLACT-RXN|RXN-11152|RXN-8783}}
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** [http://www.uniprot.org/uniprot/Q9JV69 Q9JV69]
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{{#set: pathway associated=PWY-2221|PWY-6415|PWY-7165|NPGLUCAT-PWY|GLUCOSE1PMETAB-PWY|PWY3DJ-35471|GALDEG-PWY|PWY-5530|DHGLUCONATE-PYR-CAT-PWY}}
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** [http://www.uniprot.org/uniprot/P44859 P44859]
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** [http://www.uniprot.org/uniprot/Q58519 Q58519]
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** [http://www.uniprot.org/uniprot/P0A6K1 P0A6K1]
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** [http://www.uniprot.org/uniprot/Q51564 Q51564]
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** [http://www.uniprot.org/uniprot/P46814 P46814]
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** [http://www.uniprot.org/uniprot/O05322 O05322]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Diaminopimelate epimerase, DapF}}
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{{#set: ec number=EC-5.1.1.7}}
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{{#set: gene associated=Ec-06_009100}}
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{{#set: in pathway=PWY-5097|DAPLYSINESYN-PWY|PWY-2941}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:22, 21 March 2018

Gene Ec-21_001990

  • left end position:
    • 3036840
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 3049270
  • centisome position:
    • 41.14893
  • Synonym(s):
    • Esi_0150_0079
    • Esi0150_0079

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-5966&oldid=17961"