Difference between revisions of "PWY-6142"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] == * direction: ** REVERSIBLE * common name: ** Tryptophan synthase beta subun...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2381 RXN0-2381] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
 
* common name:
 
* common name:
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** Tryptophan synthase beta subunit-like PLP-dependent enzyme
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** gluconeogenesis II (Methanobacterium thermoautotrophicum)
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** Tryptophan synthase (alpha / beta chains)
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** Tryptophan synthase, beta chain
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−
* ec number:
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** [http://enzyme.expasy.org/EC/4.1.2.8 EC-4.1.2.8]
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* Synonym(s):
 
* Synonym(s):
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** carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''10''' reactions found over '''14''' reactions in the full pathway
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** 1 [[INDOLE-3-GLYCEROL-P]][c] '''<=>''' 1 [[GAP]][c] '''+''' 1 [[INDOLE]][c]
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* [[2PGADEHYDRAT-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''<=>''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 indole[c]
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*** [[Ec-14_005400]]
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*** [[Ec-27_004000]]
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== Genes associated with this reaction  ==
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*** [[Ec-26_004120]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 reconstruction source(s) associated:
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* Gene: [[Ec-27_001950]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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*** Assignment: EC-NUMBER
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* [[3PGAREARR-RXN]]
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* Gene: [[Ec-00_008830]]
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** 7 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-27_000330]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-24_002670]]
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* Gene: [[Ec-24_002360]]
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*** [[Ec-10_005410]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-03_002160]]
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*** Assignment: EC-NUMBER
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*** [[Ec-03_002170]]
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* Gene: [[Ec-24_004010]]
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*** [[Ec-01_000980]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-06_009930]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 2 reconstruction source(s) associated:
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* Gene: [[Ec-20_002800]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [[F16ALDOLASE-RXN]]
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* Gene: [[Ec-17_002680]]
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** 4 associated gene(s):
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-10_004980]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Ec-01_008040]]
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* Gene: [[Ec-01_012080]]
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*** [[Ec-10_000880]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-14_001680]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 1 reconstruction source(s) associated:
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* Gene: [[Ec-06_007490]]
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*** [[annotation-esiliculosus_genome]]
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** Source: [[annotation-esiliculosus_genome]]
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* [[PEPCARBOX-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Ec-28_003470]]
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
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** 1 reconstruction source(s) associated:
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** '''6''' reactions found over '''6''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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* [[PWY-6949]], DIBOA-glucoside biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6949 PWY-6949]
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* [[PEPDEPHOS-RXN]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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** 3 associated gene(s):
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== Reconstruction information  ==
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*** [[Ec-26_004170]]
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* Category: [[annotation]]
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*** [[Ec-06_006860]]
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** Source: [[annotation-esiliculosus_genome]]
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*** [[Ec-12_000950]]
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*** Tool: [[pathwaytools]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[PGLUCISOM-RXN]]
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** 3 associated gene(s):
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*** [[Ec-24_002470]]
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*** [[Ec-13_003530]]
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*** [[Ec-13_003810]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PYRUFLAVREDUCT-RXN]]
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** 3 associated gene(s):
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*** [[Ec-18_003420]]
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*** [[Ec-15_004230]]
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*** [[Ec-23_002710]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PYRUVATE-CARBOXYLASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-03_001890]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN0-5224]]
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** 8 associated gene(s):
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*** [[Ec-03_001960]]
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*** [[Ec-10_002770]]
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*** [[Ec-06_004120]]
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*** [[Ec-05_001290]]
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*** [[Ec-27_005680]]
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*** [[Ec-07_004610]]
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*** [[Ec-22_001150]]
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*** [[Ec-16_004700]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
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*** [[Ec-08_000500]]
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*** [[Ec-24_000360]]
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*** [[Ec-03_002790]]
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*** [[Ec-23_004160]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=1.2.7.6-RXN 1.2.7.6-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PWY-7784 PWY-7784]
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* [http://metacyc.org/META/NEW-IMAGE?object=R302-RXN R302-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14081 14081]
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{{#set: common name=gluconeogenesis II (Methanobacterium thermoautotrophicum)}}
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* LIGAND-RXN:
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{{#set: common name=carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02340 R02340]
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{{#set: reaction found=10}}
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{{#set: direction=REVERSIBLE}}
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{{#set: total reaction=14}}
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{{#set: common name=Tryptophan synthase beta subunit-like PLP-dependent enzyme}}
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{{#set: completion rate=71.0}}
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{{#set: common name=Tryptophan synthase (alpha / beta chains)}}
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{{#set: common name=Tryptophan synthase, beta chain}}
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{{#set: ec number=EC-4.1.2.8}}
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{{#set: gene associated=Ec-27_001950|Ec-00_008830|Ec-24_002360|Ec-24_004010|Ec-20_002800|Ec-17_002680|Ec-01_012080|Ec-06_007490}}
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{{#set: in pathway=TRPSYN-PWY|PWY-6949}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 20:13, 21 March 2018

Pathway PWY-6142

  • taxonomic range:
  • common name:
    • gluconeogenesis II (Methanobacterium thermoautotrophicum)
  • Synonym(s):
    • carbohydrate biosynthesis (Methanobacterium thermoautotrophicum)

Reaction(s) found

10 reactions found over 14 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-6142&oldid=25368"