Difference between revisions of "PWY-6788"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE-12-DIOXYGENASE-RXN HOMOGENTISATE-12-DIOXYGENASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-11...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE-12-DIOXYGENASE-RXN HOMOGENTISATE-12-DIOXYGENASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1117 TAX-1117]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3035 TAX-3035]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
 
* common name:
 
* common name:
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** homogentisate 1,2-dioxygenase
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** TCA cycle IV (2-oxoglutarate decarboxylase)
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* ec number:
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** [http://enzyme.expasy.org/EC/1.13.11.5 EC-1.13.11.5]
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* Synonym(s):
 
* Synonym(s):
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** citric acid cycle
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** tricarboxylic acid cycle
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** Szent-Gyorgyi-Krebs cycle
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** Krebs cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''9''' reactions found over '''11''' reactions in the full pathway
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[HOMOGENTISATE]][c] '''=>''' 1 [[4-MALEYL-ACETOACETATE]][c] '''+''' 1 [[PROTON]][c]
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* [[ACONITATEDEHYDR-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 oxygen[c] '''+''' 1 homogentisate[c] '''=>''' 1 4-maleyl-acetoacetate[c] '''+''' 1 H+[c]
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*** [[Ec-16_001000]]
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*** [[Ec-12_000170]]
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== Genes associated with this reaction  ==
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** 1 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-17_003830]]
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* [[ACONITATEHYDR-RXN]]
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** ESILICULOSUS_GENOME
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** 2 associated gene(s):
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***GO-TERM
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*** [[Ec-16_001000]]
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== Pathways  ==
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*** [[Ec-12_000170]]
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* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
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** 1 reconstruction source(s) associated:
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** '''3''' reactions found over '''5''' reactions in the full pathway
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*** [[annotation-esiliculosus_genome]]
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== Reconstruction information  ==
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* [[CITSYN-RXN]]
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* Category: [[annotation]]
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** 0 associated gene:
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** Source: [[annotation-esiliculosus_genome]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-esiliculosus_genome]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Ec-25_001360]]
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*** [[Ec-23_003460]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[ISOCIT-CLEAV-RXN]]
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** 1 associated gene(s):
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*** [[Ec-12_007550]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[ISOCITDEH-RXN]]
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** 1 associated gene(s):
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*** [[Ec-11_003080]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Ec-10_006200]]
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*** [[Ec-02_003100]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[MALSYN-RXN]]
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** 1 associated gene(s):
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*** [[Ec-12_003860]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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*** [[orthology-aragem]]
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* [[RXN-14971]]
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** 6 associated gene(s):
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*** [[Ec-05_003640]]
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*** [[Ec-21_003470]]
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*** [[Ec-07_002870]]
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*** [[Ec-11_000360]]
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*** [[Ec-27_006560]]
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*** [[Ec-07_007310]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7774 RXN-7774]
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* [http://metacyc.org/META/NEW-IMAGE?object=SUCCSEMIALDDEHYDROG-RXN SUCCSEMIALDDEHYDROG-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-1117}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15449 15449]
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{{#set: taxonomic range=TAX-3035}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-1224}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02519 R02519]
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{{#set: taxonomic range=TAX-201174}}
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* UNIPROT:
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{{#set: common name=TCA cycle IV (2-oxoglutarate decarboxylase)}}
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** [http://www.uniprot.org/uniprot/Q9Y041 Q9Y041]
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{{#set: common name=citric acid cycle|tricarboxylic acid cycle|Szent-Gyorgyi-Krebs cycle|Krebs cycle}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=9}}
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{{#set: common name=homogentisate 1,2-dioxygenase}}
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{{#set: total reaction=11}}
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{{#set: ec number=EC-1.13.11.5}}
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{{#set: completion rate=82.0}}
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{{#set: gene associated=Ec-17_003830}}
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{{#set: in pathway=TYRFUMCAT-PWY}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-esiliculosus_genome}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 14:11, 21 March 2018

Pathway P105-PWY

  • taxonomic range:
  • common name:
    • TCA cycle IV (2-oxoglutarate decarboxylase)
  • Synonym(s):
    • citric acid cycle
    • tricarboxylic acid cycle
    • Szent-Gyorgyi-Krebs cycle
    • Krebs cycle

Reaction(s) found

9 reactions found over 11 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=PWY-6788&oldid=16380"