Difference between revisions of "PYRUFLAVREDUCT-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHEAMINOTRANS-RXN PHEAMINOTRANS-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.e...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN] == * direction: ** REVERSIBLE * common name: ** Transketolas...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHEAMINOTRANS-RXN PHEAMINOTRANS-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 +
* common name:
 +
** Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.57 EC-2.6.1.57]
+
** [http://enzyme.expasy.org/EC/1.2.7.1 EC-1.2.7.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PHENYL-PYRUVATE]][c] '''+''' 1 [[GLT]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[PHE]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ACETYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-oxo-3-phenylpropanoate[c] '''+''' 1 L-glutamate[c] '''<=>''' 1 2-oxoglutarate[c] '''+''' 1 L-phenylalanine[c]
+
** 1 coenzyme A[c] '''+''' 1 pyruvate[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''<=>''' 1 CO2[c] '''+''' 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 H+[c] '''+''' 1 acetyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-03_003270]]
+
* Gene: [[Ec-18_003420]]
−
** Source: [[orthology-aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* Gene: [[Ec-00_001230]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[orthology-aragem]]
+
* Gene: [[Ec-15_004230]]
−
* Gene: [[Ec-23_003500]]
+
** Source: [[annotation-esiliculosus_genome]]
−
** Source: [[orthology-aragem]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* Gene: [[Ec-12_000850]]
+
* Gene: [[Ec-23_002710]]
−
** Source: [[orthology-aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
* Gene: [[Ec-01_007480]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[orthology-aragem]]
+
−
* Gene: [[Ec-09_004540]]
+
−
** Source: [[orthology-aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5079]], L-phenylalanine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5079 PWY-5079]
+
* [[PWY-6876]], isopropanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6876 PWY-6876]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6588]], pyruvate fermentation to acetone: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6588 PWY-6588]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[CENTFERM-PWY]], pyruvate fermentation to butanoate: [http://metacyc.org/META/NEW-IMAGE?object=CENTFERM-PWY CENTFERM-PWY]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 +
** '''6''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5483]], pyruvate fermentation to acetate III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5483 PWY-5483]
 
** '''1''' reactions found over '''4''' reactions in the full pathway
 
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7432]], L-phenylalanine biosynthesis III (cytosolic, plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7432 PWY-7432]
+
* [[PWY-6583]], pyruvate fermentation to butanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6583 PWY-6583]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''8''' reactions in the full pathway
−
* [[ANAPHENOXI-PWY]], L-phenylalanine degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=ANAPHENOXI-PWY ANAPHENOXI-PWY]
+
* [[PWY-5493]], reductive monocarboxylic acid cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5493 PWY-5493]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PHESYN]], L-phenylalanine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PHESYN PHESYN]
+
* [[PWY-5600]], pyruvate fermentation to acetate VII: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5600 PWY-5600]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6587]], pyruvate fermentation to ethanol III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6587 PWY-6587]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''8''' reactions found over '''24''' reactions in the full pathway
 +
* [[GLUDEG-II-PWY]], L-glutamate degradation VII (to butanoate): [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-II-PWY GLUDEG-II-PWY]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[P142-PWY]], pyruvate fermentation to acetate I: [http://metacyc.org/META/NEW-IMAGE?object=P142-PWY P142-PWY]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[annotation]]
−
** Source: [[orthology-aragem]]
+
** Source: [[annotation-esiliculosus_genome]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25152 25152]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00694 R00694]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01196 R01196]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O84642 O84642]
+
** [http://www.uniprot.org/uniprot/Q57957 Q57957]
−
** [http://www.uniprot.org/uniprot/Q02636 Q02636]
+
** [http://www.uniprot.org/uniprot/O28574 O28574]
−
** [http://www.uniprot.org/uniprot/Q9Z7G5 Q9Z7G5]
+
** [http://www.uniprot.org/uniprot/Q56316 Q56316]
−
** [http://www.uniprot.org/uniprot/Q9V0L2 Q9V0L2]
+
** [http://www.uniprot.org/uniprot/Q9R503 Q9R503]
−
** [http://www.uniprot.org/uniprot/Q9PHA8 Q9PHA8]
+
** [http://www.uniprot.org/uniprot/Q57714 Q57714]
−
** [http://www.uniprot.org/uniprot/O59096 O59096]
+
** [http://www.uniprot.org/uniprot/O05651 O05651]
−
** [http://www.uniprot.org/uniprot/O58489 O58489]
+
** [http://www.uniprot.org/uniprot/Q57715 Q57715]
−
** [http://www.uniprot.org/uniprot/Q9UZ63 Q9UZ63]
+
** [http://www.uniprot.org/uniprot/O27771 O27771]
−
** [http://www.uniprot.org/uniprot/Q9JT83 Q9JT83]
+
** [http://www.uniprot.org/uniprot/O28572 O28572]
−
** [http://www.uniprot.org/uniprot/Q9JYA1 Q9JYA1]
+
** [http://www.uniprot.org/uniprot/Q56317 Q56317]
−
** [http://www.uniprot.org/uniprot/P95468 P95468]
+
** [http://www.uniprot.org/uniprot/Q9UWL2 Q9UWL2]
−
** [http://www.uniprot.org/uniprot/Q9UWK9 Q9UWK9]
+
** [http://www.uniprot.org/uniprot/P56810 P56810]
−
** [http://www.uniprot.org/uniprot/Q9UWK8 Q9UWK8]
+
** [http://www.uniprot.org/uniprot/O28571 O28571]
−
** [http://www.uniprot.org/uniprot/P74861 P74861]
+
** [http://www.uniprot.org/uniprot/Q9UWL1 Q9UWL1]
−
** [http://www.uniprot.org/uniprot/P04693 P04693]
+
** [http://www.uniprot.org/uniprot/Q57717 Q57717]
 +
** [http://www.uniprot.org/uniprot/O25312 O25312]
 +
** [http://www.uniprot.org/uniprot/O25738 O25738]
 +
** [http://www.uniprot.org/uniprot/O25739 O25739]
 +
** [http://www.uniprot.org/uniprot/O58411 O58411]
 +
** [http://www.uniprot.org/uniprot/Q9UYZ4 Q9UYZ4]
 +
** [http://www.uniprot.org/uniprot/Q9UYZ3 Q9UYZ3]
 +
** [http://www.uniprot.org/uniprot/Q59455 Q59455]
 +
** [http://www.uniprot.org/uniprot/Q59456 Q59456]
 +
** [http://www.uniprot.org/uniprot/P80521 P80521]
 +
** [http://www.uniprot.org/uniprot/P80522 P80522]
 +
** [http://www.uniprot.org/uniprot/P80523 P80523]
 +
** [http://www.uniprot.org/uniprot/P80524 P80524]
 +
** [http://www.uniprot.org/uniprot/P95903 P95903]
 +
** [http://www.uniprot.org/uniprot/P95904 P95904]
 +
** [http://www.uniprot.org/uniprot/Q51799 Q51799]
 +
** [http://www.uniprot.org/uniprot/Q51800 Q51800]
 +
** [http://www.uniprot.org/uniprot/Q51802 Q51802]
 +
** [http://www.uniprot.org/uniprot/Q51803 Q51803]
 +
** [http://www.uniprot.org/uniprot/Q51804 Q51804]
 +
** [http://www.uniprot.org/uniprot/Q51805 Q51805]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: ec number=EC-2.6.1.57}}
+
{{#set: common name=Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II}}
−
{{#set: gene associated=Ec-03_003270|Ec-00_001230|Ec-23_003500|Ec-12_000850|Ec-01_007480|Ec-09_004540}}
+
{{#set: ec number=EC-1.2.7.1}}
−
{{#set: in pathway=PWY-5079|PWY-7432|ANAPHENOXI-PWY|PHESYN}}
+
{{#set: gene associated=Ec-18_003420|Ec-15_004230|Ec-23_002710}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-6876|P23-PWY|P42-PWY|PWY-6588|NPGLUCAT-PWY|CENTFERM-PWY|PWY-5392|PWY-5483|PWY-6583|PWY-5493|PWY-5600|PWY-6587|PWY-5497|GLUDEG-II-PWY|PWY-6142|PWY-5538|P142-PWY|PWY-6863}}
−
{{#set: reconstruction source=orthology-aragem}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:42, 21 March 2018

Reaction PYRUFLAVREDUCT-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6876, isopropanol biosynthesis (engineered): PWY-6876
    • 2 reactions found over 5 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle: P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6588, pyruvate fermentation to acetone: PWY-6588
    • 2 reactions found over 5 reactions in the full pathway
  • NPGLUCAT-PWY, Entner-Doudoroff pathway II (non-phosphorylative): NPGLUCAT-PWY
    • 4 reactions found over 9 reactions in the full pathway
  • CENTFERM-PWY, pyruvate fermentation to butanoate: CENTFERM-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5483, pyruvate fermentation to acetate III: PWY-5483
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6583, pyruvate fermentation to butanol I: PWY-6583
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5493, reductive monocarboxylic acid cycle: PWY-5493
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5600, pyruvate fermentation to acetate VII: PWY-5600
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6587, pyruvate fermentation to ethanol III: PWY-6587
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 8 reactions found over 24 reactions in the full pathway
  • GLUDEG-II-PWY, L-glutamate degradation VII (to butanoate): GLUDEG-II-PWY
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-5538, pyruvate fermentation to acetate VI: PWY-5538
    • 2 reactions found over 4 reactions in the full pathway
  • P142-PWY, pyruvate fermentation to acetate I: P142-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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