Difference between revisions of "RXN-16095"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16095 RXN-16095] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-ISOPROPYLMALDEHYDROG-RXN 3-ISOPROPYLMALDEHYDROG-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16095 RXN-16095] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
* ec number:
−
** 3-isopropylmalate dehydrogenase
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** [http://enzyme.expasy.org/EC/1.1.1.330 EC-1.1.1.330]
 
* Synonym(s):
 
* Synonym(s):
−
** β-isopropylmalic enzyme
 
−
** threo-Ds-3-isopropylmalate dehydrogenase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD-7100]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[CPD-17346]][c] '''=>''' 1 [[CPD-17347]][c] '''+''' 1 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (2R,3S)-3-isopropylmalate[c] '''+''' 1 NAD+[c] '''<=>''' 1 (2S)-2-isopropyl-3-oxosuccinate[c] '''+''' 1 H+[c] '''+''' 1 NADH[c]
+
** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 3-oxo-(11Z,14Z)-icosa-11,14-dienoyl-CoA[c] '''=>''' 1 (3R)-hydroxy-(11Z,14Z)-icosa-11,14-dienoyl-CoA[c] '''+''' 1 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* Gene: [[Ec-16_002120]]
 
−
** Source: [[annotation-esiliculosus_genome]]
 
−
*** Assignment: EC-NUMBER
 
−
** Source: [[orthology-aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
+
* [[PWY-7601]], arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7601 PWY-7601]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
+
* [[PWY-7725]], arachidonate biosynthesis V (8-detaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7725 PWY-7725]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6598]], sciadonate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6598 PWY-6598]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[gap-filling]]
−
** Source: [[orthology-aragem]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[meneco]]
−
* Category: [[annotation]]
+
**** Comment: [[added for gapfilling]]
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10892 10892]
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{{#set: ec number=EC-1.1.1.330}}
−
* LIGAND-RXN:
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{{#set: in pathway=PWY-7601|PWY-7725|PWY-6598}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04426 R04426]
+
{{#set: reconstruction category=gap-filling}}
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* UNIPROT:
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
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** [http://www.uniprot.org/uniprot/P05644 P05644]
+
{{#set: reconstruction tool=meneco}}
−
** [http://www.uniprot.org/uniprot/P05645 P05645]
+
{{#set: reconstruction comment=added for gapfilling}}
−
** [http://www.uniprot.org/uniprot/Q01987 Q01987]
+
−
** [http://www.uniprot.org/uniprot/Q00412 Q00412]
+
−
** [http://www.uniprot.org/uniprot/P08791 P08791]
+
−
** [http://www.uniprot.org/uniprot/P30125 P30125]
+
−
** [http://www.uniprot.org/uniprot/Q9PLW0 Q9PLW0]
+
−
** [http://www.uniprot.org/uniprot/O66607 O66607]
+
−
** [http://www.uniprot.org/uniprot/P12010 P12010]
+
−
** [http://www.uniprot.org/uniprot/P04173 P04173]
+
−
** [http://www.uniprot.org/uniprot/Q5SIY4 Q5SIY4]
+
−
** [http://www.uniprot.org/uniprot/P24098 P24098]
+
−
** [http://www.uniprot.org/uniprot/Q9JU79 Q9JU79]
+
−
** [http://www.uniprot.org/uniprot/P43860 P43860]
+
−
** [http://www.uniprot.org/uniprot/P41019 P41019]
+
−
** [http://www.uniprot.org/uniprot/P54354 P54354]
+
−
** [http://www.uniprot.org/uniprot/Q56268 Q56268]
+
−
** [http://www.uniprot.org/uniprot/P29102 P29102]
+
−
** [http://www.uniprot.org/uniprot/P37412 P37412]
+
−
** [http://www.uniprot.org/uniprot/P23390 P23390]
+
−
** [http://www.uniprot.org/uniprot/P29696 P29696]
+
−
** [http://www.uniprot.org/uniprot/P41766 P41766]
+
−
** [http://www.uniprot.org/uniprot/Q02143 Q02143]
+
−
** [http://www.uniprot.org/uniprot/P34733 P34733]
+
−
** [http://www.uniprot.org/uniprot/P50180 P50180]
+
−
** [http://www.uniprot.org/uniprot/Q12591 Q12591]
+
−
** [http://www.uniprot.org/uniprot/Q12590 Q12590]
+
−
** [http://www.uniprot.org/uniprot/Q12592 Q12592]
+
−
** [http://www.uniprot.org/uniprot/P07139 P07139]
+
−
** [http://www.uniprot.org/uniprot/P41926 P41926]
+
−
** [http://www.uniprot.org/uniprot/P48012 P48012]
+
−
** [http://www.uniprot.org/uniprot/P87256 P87256]
+
−
** [http://www.uniprot.org/uniprot/P87257 P87257]
+
−
** [http://www.uniprot.org/uniprot/P73960 P73960]
+
−
** [http://www.uniprot.org/uniprot/O86504 O86504]
+
−
** [http://www.uniprot.org/uniprot/O85837 O85837]
+
−
** [http://www.uniprot.org/uniprot/P18869 P18869]
+
−
** [http://www.uniprot.org/uniprot/P34738 P34738]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=3-isopropylmalate dehydrogenase}}
+
−
{{#set: common name=&beta;-isopropylmalic enzyme|threo-Ds-3-isopropylmalate dehydrogenase}}
+
−
{{#set: gene associated=Ec-16_002120}}
+
−
{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:23, 21 March 2018

Reaction RXN-16095

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 NADPH[c] + 1 3-oxo-(11Z,14Z)-icosa-11,14-dienoyl-CoA[c] => 1 (3R)-hydroxy-(11Z,14Z)-icosa-11,14-dienoyl-CoA[c] + 1 NADP+[c]

Genes associated with this reaction

Pathways

  • PWY-7601, arachidonate biosynthesis IV (8-detaturase, lower eukaryotes): PWY-7601
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7725, arachidonate biosynthesis V (8-detaturase, mammals): PWY-7725
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6598, sciadonate biosynthesis: PWY-6598
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=RXN-16095&oldid=26548"