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| − | [[Category:Reaction]] | + | [[Category:Metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == | + | == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=D-Ribopyranose D-Ribopyranose] == |
| − | * direction:
| + | |
| − | ** LEFT-TO-RIGHT
| + | |
| | * common name: | | * common name: |
| − | ** PLP-binding barrel | + | ** D-ribopyranose |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) known to consume the compound == |
| − | * With identifiers:
| + | == Reaction(s) known to produce the compound == |
| − | ** 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[LYS]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
| + | == Reaction(s) of unknown directionality == |
| − | * With common name(s):
| + | * [[RXN-14883]] |
| − | ** 1 meso-diaminopimelate[c] '''+''' 1 H+[c] '''=>''' 1 L-lysine[c] '''+''' 1 CO2[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Ec-09_002410]]
| + | |
| − | ** [[pantograph]]-[[aragem]]
| + | |
| − | * [[Ec-01_000060]]
| + | |
| − | ** ESILICULOSUS_GENOME
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Ec-09_002360]]
| + | |
| − | ** [[pantograph]]-[[aragem]]
| + | |
| − | * [[Ec-09_002420]]
| + | |
| − | ** [[pantograph]]-[[aragem]]
| + | |
| − | == Pathways == | + | |
| − | * [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
| + | |
| − | ** '''7''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
| + | |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
| + | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
| + | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | == Reconstruction information == | + | |
| − | * [[orthology]]: | + | |
| − | ** [[pantograph]]:
| + | |
| − | *** [[aragem]]
| + | |
| − | * [[annotation]]:
| + | |
| − | ** [[pathwaytools]]:
| + | |
| − | *** [[esiliculosus_genome]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: common name=D-ribopyranose}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
| + | {{#set: reversible reaction associated=RXN-14883}} |
| − | * LIGAND-RXN:
| + | |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
| + | |
| − | * UNIPROT:
| + | |
| − | ** [http://www.uniprot.org/uniprot/P19572 P19572]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P44316 P44316]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P56129 P56129]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O67262 O67262]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P00861 P00861]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O27390 O27390]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q58497 Q58497]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O29458 O29458]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P41023 P41023]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P23630 P23630]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P09890 P09890]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q55484 Q55484]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O05321 O05321]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}}
| + | |
| − | {{#set: common name=PLP-binding barrel}} | + | |
| − | {{#set: ec number=EC-4.1.1.20}} | + | |
| − | {{#set: gene associated=Ec-09_002410|Ec-01_000060|Ec-09_002360|Ec-09_002420}}
| + | |
| − | {{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
| + | |
| − | {{#set: reconstruction category=orthology}}
| + | |
| − | {{#set: reconstruction tool=pantograph}}
| + | |
| − | {{#set: reconstruction source=aragem}}
| + | |
| − | {{#set: reconstruction category=annotation}}
| + | |
| − | {{#set: reconstruction tool=pathwaytools}}
| + | |
| − | {{#set: reconstruction source=esiliculosus_genome}}
| + | |
