Difference between revisions of "SULFITE-REDUCT-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** PLP-b...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFITE-REDUCT-RXN SULFITE-REDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SULFITE-REDUCT-RXN SULFITE-REDUCT-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** PLP-binding barrel
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
+
** [http://enzyme.expasy.org/EC/1.8.1.2 EC-1.8.1.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[LYS]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 5 [[PROTON]][c] '''+''' 3 [[NADPH]][c] '''+''' 1 [[SO3]][c] '''=>''' 3 [[WATER]][c] '''+''' 3 [[NADP]][c] '''+''' 1 [[HS]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 meso-diaminopimelate[c] '''+''' 1 H+[c] '''=>''' 1 L-lysine[c] '''+''' 1 CO2[c]
+
** 5 H+[c] '''+''' 3 NADPH[c] '''+''' 1 sulfite[c] '''=>''' 3 H2O[c] '''+''' 3 NADP+[c] '''+''' 1 hydrogen sulfide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Ec-09_002410]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-01_000060]]
 
−
** ESILICULOSUS_GENOME
 
−
***EC-NUMBER
 
−
* [[Ec-09_002360]]
 
−
** [[pantograph]]-[[aragem]]
 
−
* [[Ec-09_002420]]
 
−
** [[pantograph]]-[[aragem]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
+
* [[SO4ASSIM-PWY]], sulfate reduction I (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=SO4ASSIM-PWY SO4ASSIM-PWY]
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
+
* [[PWY-6683]], sulfate reduction III (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6683 PWY-6683]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[gap-filling]]
−
** [[pantograph]]:
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** [[aragem]]
+
*** Tool: [[meneco]]
−
* [[annotation]]:
+
**** Comment: [[added for gapfilling]]
−
** [[pathwaytools]]:
+
−
*** [[esiliculosus_genome]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13801 13801]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00858 R00858]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19572 P19572]
+
** [http://www.uniprot.org/uniprot/P38039 P38039]
−
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
+
** [http://www.uniprot.org/uniprot/P17845 P17845]
−
** [http://www.uniprot.org/uniprot/P44316 P44316]
+
** [http://www.uniprot.org/uniprot/Q9JUD9 Q9JUD9]
−
** [http://www.uniprot.org/uniprot/P56129 P56129]
+
** [http://www.uniprot.org/uniprot/Q9JUD8 Q9JUD8]
−
** [http://www.uniprot.org/uniprot/O67262 O67262]
+
** [http://www.uniprot.org/uniprot/O32214 O32214]
−
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
+
** [http://www.uniprot.org/uniprot/P38038 P38038]
−
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
+
** [http://www.uniprot.org/uniprot/Q59396 Q59396]
−
** [http://www.uniprot.org/uniprot/P00861 P00861]
+
** [http://www.uniprot.org/uniprot/P17846 P17846]
−
** [http://www.uniprot.org/uniprot/O27390 O27390]
+
** [http://www.uniprot.org/uniprot/P52674 P52674]
−
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
+
** [http://www.uniprot.org/uniprot/P39692 P39692]
−
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
+
−
** [http://www.uniprot.org/uniprot/O29458 O29458]
+
−
** [http://www.uniprot.org/uniprot/P41023 P41023]
+
−
** [http://www.uniprot.org/uniprot/P23630 P23630]
+
−
** [http://www.uniprot.org/uniprot/P09890 P09890]
+
−
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
+
−
** [http://www.uniprot.org/uniprot/O05321 O05321]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=PLP-binding barrel}}
+
{{#set: ec number=EC-1.8.1.2}}
−
{{#set: ec number=EC-4.1.1.20}}
+
{{#set: in pathway=SO4ASSIM-PWY|PWY-6683}}
−
{{#set: gene associated=Ec-09_002410|Ec-01_000060|Ec-09_002360|Ec-09_002420}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=aragem}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=esiliculosus_genome}}
+

Latest revision as of 20:32, 21 March 2018

Reaction SULFITE-REDUCT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 5 H+[c] + 3 NADPH[c] + 1 sulfite[c] => 3 H2O[c] + 3 NADP+[c] + 1 hydrogen sulfide[c]

Genes associated with this reaction

Pathways

  • SO4ASSIM-PWY, sulfate reduction I (assimilatory): SO4ASSIM-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6683, sulfate reduction III (assimilatory): PWY-6683
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=SULFITE-REDUCT-RXN&oldid=27664"