Difference between revisions of "TRNA-CHARGING-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-602 RXN-602] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1.14...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?obje...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-602 RXN-602] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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* ec number:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://enzyme.expasy.org/EC/1.14.11.19 EC-1.14.11.19]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* common name:
 +
** tRNA charging
 
* Synonym(s):
 
* Synonym(s):
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** Leucoanthocyanidin dioxygenase
 
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''21''' reactions found over '''21''' reactions in the full pathway
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** 1 [[CPD-590]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CPD-591]][c] '''+''' 2 [[WATER]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[ALANINE--TRNA-LIGASE-RXN]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 (2R,3S,4S)-leucocyanidin[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''=>''' 1 cyanidin[c] '''+''' 2 H2O[c] '''+''' 1 succinate[c] '''+''' 1 H+[c] '''+''' 1 CO2[c]
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*** [[Ec-20_000890]]
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*** [[Ec-07_007070]]
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== Genes associated with this reaction  ==
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*** [[Ec-01_006770]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 reconstruction source(s) associated:
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* [[Ec-19_002760]]
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*** [[annotation-esiliculosus_genome]]
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** [[pantograph]]-[[aragem]]
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* [[ARGININE--TRNA-LIGASE-RXN]]
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* [[Ec-19_002750]]
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** 2 associated gene(s):
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** [[pantograph]]-[[aragem]]
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*** [[Ec-01_003640]]
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* [[Ec-08_003510]]
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*** [[Ec-03_001410]]
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** [[pantograph]]-[[aragem]]
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** 1 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-esiliculosus_genome]]
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== Reconstruction information  ==
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* [[ASPARAGINE--TRNA-LIGASE-RXN]]
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* [[orthology]]:
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** 1 associated gene(s):
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** [[pantograph]]:
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*** [[Ec-16_001810]]
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*** [[aragem]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[ASPARTATE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-06_003810]]
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*** [[Ec-19_005440]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[CYSTEINE--TRNA-LIGASE-RXN]]
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** 3 associated gene(s):
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*** [[Ec-10_004180]]
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*** [[Ec-02_002270]]
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*** [[Ec-12_001440]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[GLURS-RXN]]
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** 1 associated gene(s):
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*** [[Ec-06_008480]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[GLUTAMINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-10_000780]]
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*** [[Ec-17_003970]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[GLYCINE--TRNA-LIGASE-RXN]]
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** 3 associated gene(s):
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*** [[Ec-07_006780]]
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*** [[Ec-07_006790]]
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*** [[Ec-14_006280]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[HISTIDINE--TRNA-LIGASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-11_004790]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[ISOLEUCINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-12_001710]]
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*** [[Ec-06_008740]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[LEUCINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-12_001400]]
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*** [[Ec-06_008730]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[LYSINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-19_000900]]
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*** [[Ec-01_005790]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[METHIONINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-16_002540]]
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*** [[Ec-18_004570]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PHENYLALANINE--TRNA-LIGASE-RXN]]
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** 4 associated gene(s):
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*** [[Ec-15_003330]]
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*** [[Ec-06_008260]]
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*** [[Ec-02_005310]]
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*** [[Ec-27_001900]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[PROLINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-26_002190]]
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*** [[Ec-08_005570]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[RXN-16165]]
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** 2 associated gene(s):
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*** [[Ec-16_002540]]
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*** [[Ec-18_004570]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[SERINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-24_004300]]
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*** [[Ec-08_002360]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[THREONINE--TRNA-LIGASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-05_005060]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
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* [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
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** 1 associated gene(s):
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*** [[Ec-08_005870]]
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** 1 reconstruction source(s) associated:
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*** [[annotation-esiliculosus_genome]]
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* [[TYROSINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-18_001870]]
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*** [[Ec-01_009160]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
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* [[VALINE--TRNA-LIGASE-RXN]]
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** 2 associated gene(s):
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*** [[Ec-08_004480]]
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*** [[Ec-12_005070]]
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** 1 reconstruction source(s) associated:
 +
*** [[annotation-esiliculosus_genome]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* ECOCYC:
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** [http://www.genome.jp/dbget-bin/www_bget?R05036 R05036]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: ec number=EC-1.14.11.19}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=Leucoanthocyanidin dioxygenase}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: gene associated=Ec-19_002760|Ec-19_002750|Ec-08_003510}}
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{{#set: common name=tRNA charging}}
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{{#set: in pathway=}}
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{{#set: reaction found=21}}
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{{#set: reconstruction category=orthology}}
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{{#set: total reaction=21}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: completion rate=100.0}}
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{{#set: reconstruction source=aragem}}
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Latest revision as of 20:01, 21 March 2018

Pathway TRNA-CHARGING-PWY

Reaction(s) found

21 reactions found over 21 reactions in the full pathway

Reaction(s) not found

External links




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