Difference between revisions of "TransportSeed MG+2"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == * direction: ** REVERSIBLE * common name: ** Succinate:CoA ligase...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7440 PWY-7440] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2037 TAX-20...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7440 PWY-7440] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2037 TAX-2037]
 
* common name:
 
* common name:
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** Succinate:CoA ligase (ADP-forming)
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** dTDP-β-L-4-epi-vancosamine biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5]
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* Synonym(s):
 
* Synonym(s):
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** Succinate thiokinase
 
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** succinyl CoA synthesis
 
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''8''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[SUC-COA]][c]
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* [[DTDPGLUCDEHYDRAT-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 succinate[c] '''<=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 succinyl-CoA[c]
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*** [[Ec-27_005770]]
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*** [[Ec-01_007350]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-esiliculosus_genome]]
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* [[Ec-02_001020]]
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*** [[orthology-aragem]]
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** ESILICULOSUS_GENOME
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== Reaction(s) not found ==
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCOSEPP-RXN DTDPGLUCOSEPP-RXN]
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** [[pantograph]]-[[aragem]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12404 RXN-12404]
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* [[Ec-10_000030]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12943 RXN-12943]
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** [[pantograph]]-[[aragem]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15225 RXN-15225]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15226 RXN-15226]
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15227 RXN-15227]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15233 RXN-15233]
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* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
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** '''6''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
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** '''6''' reactions found over '''12''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[aragem]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[esiliculosus_genome]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2037}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17661 17661]
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{{#set: common name=dTDP-&beta;-L-4-epi-vancosamine biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
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{{#set: total reaction=8}}
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* UNIPROT:
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{{#set: completion rate=13.0}}
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** [http://www.uniprot.org/uniprot/O28098 O28098]
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** [http://www.uniprot.org/uniprot/P53594 P53594]
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** [http://www.uniprot.org/uniprot/O28733 O28733]
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** [http://www.uniprot.org/uniprot/P45101 P45101]
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** [http://www.uniprot.org/uniprot/P45102 P45102]
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** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
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** [http://www.uniprot.org/uniprot/Q58643 Q58643]
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** [http://www.uniprot.org/uniprot/O26663 O26663]
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** [http://www.uniprot.org/uniprot/P80886 P80886]
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** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
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** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
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** [http://www.uniprot.org/uniprot/P80865 P80865]
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** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
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** [http://www.uniprot.org/uniprot/O67729 O67729]
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** [http://www.uniprot.org/uniprot/O67546 O67546]
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** [http://www.uniprot.org/uniprot/P53593 P53593]
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** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
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** [http://www.uniprot.org/uniprot/P0A836 P0A836]
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** [http://www.uniprot.org/uniprot/O82662 O82662]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Succinate:CoA ligase (ADP-forming)}}
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{{#set: ec number=EC-6.2.1.5}}
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{{#set: common name=Succinate thiokinase|succinyl CoA synthesis}}
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{{#set: gene associated=Ec-02_001020|Ec-10_000030}}
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{{#set: in pathway=PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|PWY-6969|PWY-5537|PWY-6728|PWY-5538|PWY-5690|PWY66-398|TCA}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=aragem}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=esiliculosus_genome}}
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Revision as of 22:09, 17 March 2018

Pathway PWY-7440

  • taxonomic range:
  • common name:
    • dTDP-β-L-4-epi-vancosamine biosynthesis
  • Synonym(s):

Reaction(s) found

1 reactions found over 8 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/ectogem/index.php?title=TransportSeed_MG%2B2&oldid=11856"