Difference between revisions of "XMPXAN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AIRCARBOXY-RXN AIRCARBOXY-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoribosylami...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=XMPXAN-RXN XMPXAN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 5'-nucleotidase * ec numb...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AIRCARBOXY-RXN AIRCARBOXY-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=XMPXAN-RXN XMPXAN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Phosphoribosylaminoimidazole carboxylase PurE domain
+
** 5'-nucleotidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.21 EC-4.1.1.21]
+
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[XANTHOSINE-5-PHOSPHATE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[XANTHOSINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 5-amino-1-(5-phospho-β-D-ribosyl)imidazole[c] '''+''' 1 CO2[c] '''=>''' 2 H+[c] '''+''' 1 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate[c]
+
** 1 H2O[c] '''+''' 1 XMP[c] '''=>''' 1 phosphate[c] '''+''' 1 xanthosine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Ec-08_006600]]
+
* Gene: [[Ec-05_000950]]
−
** Source: [[annotation-esiliculosus_genome]]
+
−
*** Assignment: EC-NUMBER
+
−
* Gene: [[Ec-10_003270]]
+
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[orthology-aragem]]
+
* Gene: [[Ec-15_000820]]
−
* Gene: [[Ec-10_003280]]
+
** Source: [[annotation-esiliculosus_genome]]
 +
*** Assignment: GO-TERM
 +
* Gene: [[Ec-12_005060]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
−
*** Assignment: EC-NUMBER
+
*** Assignment: GO-TERM
−
** Source: [[orthology-aragem]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6124 PWY-6124]
+
* [[PWY-5695]], urate biosynthesis/inosine 5'-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5695 PWY-5695]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-aragem]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-esiliculosus_genome]]
 
** Source: [[annotation-esiliculosus_genome]]
Line 40: Line 37:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10792 10792]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28530 28530]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04209 R04209]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02719 R02719]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q9RYC6 Q9RYC6]
+
−
** [http://www.uniprot.org/uniprot/Q9PPK5 Q9PPK5]
+
−
** [http://www.uniprot.org/uniprot/O66608 O66608]
+
−
** [http://www.uniprot.org/uniprot/O67239 O67239]
+
−
** [http://www.uniprot.org/uniprot/P12045 P12045]
+
−
** [http://www.uniprot.org/uniprot/P09029 P09029]
+
−
** [http://www.uniprot.org/uniprot/P12044 P12044]
+
−
** [http://www.uniprot.org/uniprot/P21264 P21264]
+
−
** [http://www.uniprot.org/uniprot/P0AG18 P0AG18]
+
−
** [http://www.uniprot.org/uniprot/P15567 P15567]
+
−
** [http://www.uniprot.org/uniprot/Q9XAY8 Q9XAY8]
+
−
** [http://www.uniprot.org/uniprot/P43849 P43849]
+
−
** [http://www.uniprot.org/uniprot/Q9JTS6 Q9JTS6]
+
−
** [http://www.uniprot.org/uniprot/P43850 P43850]
+
−
** [http://www.uniprot.org/uniprot/Q58033 Q58033]
+
−
** [http://www.uniprot.org/uniprot/Q9WYS8 Q9WYS8]
+
−
** [http://www.uniprot.org/uniprot/P22234 P22234]
+
−
** [http://www.uniprot.org/uniprot/P22348 P22348]
+
−
** [http://www.uniprot.org/uniprot/Q01930 Q01930]
+
−
** [http://www.uniprot.org/uniprot/P55195 P55195]
+
−
** [http://www.uniprot.org/uniprot/P50504 P50504]
+
−
** [http://www.uniprot.org/uniprot/Q55498 Q55498]
+
−
** [http://www.uniprot.org/uniprot/P74724 P74724]
+
−
** [http://www.uniprot.org/uniprot/O80937 O80937]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Phosphoribosylaminoimidazole carboxylase PurE domain}}
+
{{#set: common name=5'-nucleotidase}}
−
{{#set: ec number=EC-4.1.1.21}}
+
{{#set: ec number=EC-3.1.3.5}}
−
{{#set: gene associated=Ec-08_006600|Ec-10_003270|Ec-10_003280}}
+
{{#set: gene associated=Ec-05_000950|Ec-15_000820|Ec-12_005060}}
−
{{#set: in pathway=PWY-6124}}
+
{{#set: in pathway=PWY-5695|PWY-6596}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-esiliculosus_genome|orthology-aragem}}
+
{{#set: reconstruction source=annotation-esiliculosus_genome}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:21, 21 March 2018

Reaction XMPXAN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 5'-nucleotidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5695, urate biosynthesis/inosine 5'-phosphate degradation: PWY-5695
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6596, adenosine nucleotides degradation I: PWY-6596
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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