Difference between revisions of "PDH"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/LIPATPT LIPATPT] == * direction: ** LEFT-TO-RIGHT * common name: ** Lipoate-ATP adenylate transfera...")
 
(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PDH PDH] == * direction: ** LEFT-TO-RIGHT * common name: ** Pyruvate dehydrogenase * Synonym(s): =...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://bigg.ucsd.edu/universal/reactions/LIPATPT LIPATPT] ==
+
== Reaction [http://bigg.ucsd.edu/universal/reactions/PDH PDH] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Lipoate-ATP adenylate transferase
+
** Pyruvate dehydrogenase
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[atp]][c] '''+''' 1.0 [[lipoate]][c] '''=>''' 1.0 [[ppi]][c] '''+''' 1.0 [[lipoamp]][c]
+
** 1.0 [[nad]][c] '''+''' 1.0 [[coa]][c] '''+''' 1.0 [[pyr]][c] '''=>''' 1.0 [[co2]][c] '''+''' 1.0 [[nadh]][c] '''+''' 1.0 [[accoa]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 ATP C10H12N5O13P3[c] '''+''' 1.0 Lipoate[c] '''=>''' 1.0 Diphosphate[c] '''+''' 1.0 Lipoyl-AMP[c]
+
** 1.0 Nicotinamide adenine dinucleotide[c] '''+''' 1.0 Coenzyme A[c] '''+''' 1.0 Pyruvate[c] '''=>''' 1.0 CO2 CO2[c] '''+''' 1.0 Nicotinamide adenine dinucleotide - reduced[c] '''+''' 1.0 Acetyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[EF0650]]
+
* Gene: [[EF1353]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
** Source: [[orthology-l_plantarum_wcfs1]]
−
* [[EF2741]]
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
** [[pantograph]]-[[e_coli_sstr_k12_substr_mg1655]]
+
* Gene: [[EF1356]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF1355]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 +
* Gene: [[EF1354]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
 
== Pathways  ==
 
== Pathways  ==
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
 
* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
−
** '''508''' reactions found over '''2349''' reactions in the full pathway
+
** '''460''' reactions found over '''2349''' reactions in the full pathway
−
* [[map00785]]: [http://www.genome.jp/dbget-bin/www_bget?map00785 map00785]
+
* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''179''' reactions found over '''1054''' reactions in the full pathway
 +
* [[map01120]]: [http://www.genome.jp/dbget-bin/www_bget?map01120 map01120]
 +
** '''104''' reactions found over '''715''' reactions in the full pathway
 +
* [[map01200]]: [http://www.genome.jp/dbget-bin/www_bget?map01200 map01200]
 +
** '''45''' reactions found over '''220''' reactions in the full pathway
 +
* [[map00620]]: [http://www.genome.jp/dbget-bin/www_bget?map00620 map00620]
 +
** '''31''' reactions found over '''163''' reactions in the full pathway
 +
* [[map00010]]: [http://www.genome.jp/dbget-bin/www_bget?map00010 map00010]
 +
** '''24''' reactions found over '''149''' reactions in the full pathway
 +
* [[map00020]]: [http://www.genome.jp/dbget-bin/www_bget?map00020 map00020]
 +
** '''4''' reactions found over '''70''' reactions in the full pathway
 +
* [[map01130]]: [http://www.genome.jp/dbget-bin/www_bget?map01130 map01130]
 +
** '''135''' reactions found over '''694''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-b_subtilis_subsp_subtilis_str168]]
−
*** [[e_coli_sstr_k12_substr_mg1655]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-l_plantarum_wcfs1]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* EC Number : 1.2.1
 +
* BioCyc : META:PYRUVDEH-RXN
 +
* MetaNetX (MNX) Equation : MNXR102425
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12913 12913]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28042 28042]
−
* BioCyc : META:RXN-8654
+
* Reactome : REACT_R-ATH-71397
−
* MetaNetX (MNX) Equation : MNXR101081
+
* KEGG Reaction : R00209
−
* KEGG Reaction : R07770
+
−
* EC Number : 2.7.7.63
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Lipoate-ATP adenylate transferase}}
+
{{#set: common name=Pyruvate dehydrogenase}}
−
{{#set: gene associated=EF0650|EF2741}}
+
{{#set: gene associated=EF1353|EF1356|EF1355|EF1354}}
−
{{#set: in pathway=map01100|map00785}}
+
{{#set: in pathway=map01100|map01110|map01120|map01200|map00620|map00010|map00020|map01130}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-b_subtilis_subsp_subtilis_str168|orthology-l_plantarum_wcfs1}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=e_coli_sstr_k12_substr_mg1655}}
 

Latest revision as of 16:32, 21 March 2018

Reaction PDH

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Pyruvate dehydrogenase
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 Nicotinamide adenine dinucleotide[c] + 1.0 Coenzyme A[c] + 1.0 Pyruvate[c] => 1.0 CO2 CO2[c] + 1.0 Nicotinamide adenine dinucleotide - reduced[c] + 1.0 Acetyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

  • EC Number : 1.2.1
  • BioCyc : META:PYRUVDEH-RXN
  • MetaNetX (MNX) Equation : MNXR102425
  • RHEA:
  • Reactome : REACT_R-ATH-71397
  • KEGG Reaction : R00209




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