Difference between revisions of "Manual"

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(Created page with "Category:Reaction == Reaction [http://bigg.ucsd.edu/universal/reactions/PNP PNP] == * direction: ** REVERSIBLE * common name: ** Purine nucleoside phosphorylase * Synonym(...")
 
(Created page with "{{#ask: Category:Reaction reconstruction category::manual | ?common name | ?ec number | ?reconstruction category | ?reconstruction tool | ?reconstruction source | ?rec...")
 
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[[Category:Reaction]]
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{{#ask: [[Category:Reaction]] [[reconstruction category::manual]]
== Reaction [http://bigg.ucsd.edu/universal/reactions/PNP PNP] ==
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| ?common name
* direction:
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| ?ec number
** REVERSIBLE
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| ?reconstruction category
* common name:
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| ?reconstruction tool
** Purine nucleoside phosphorylase
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| ?reconstruction source
* Synonym(s):
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| ?reconstruction comment
 
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| ?gene associated
== Reaction Formula ==
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| ?in pathway
* With identifiers:
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}}
** 1.0 [[pi]][c] '''+''' 1.0 [[rnam]][c] '''<=>''' 1.0 [[r1p]][c] '''+''' 1.0 [[ncam]][c] '''+''' 1.0 [[h]][c]
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* With common name(s):
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** 1.0 Phosphate[c] '''+''' 1.0 N Ribosylnicotinamide C11H15N2O5[c] '''<=>''' 1.0 Alpha-D-Ribose 1-phosphate[c] '''+''' 1.0 Nicotinamide[c] '''+''' 1.0 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[EF0186]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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* [[EF0187]]
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** [[pantograph]]-[[b_subtilis_subsp_subtilis_str168]]
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== Pathways  ==
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* [[map01100]]: [http://www.genome.jp/dbget-bin/www_bget?map01100 map01100]
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** '''508''' reactions found over '''2349''' reactions in the full pathway
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* [[map00240]]: [http://www.genome.jp/dbget-bin/www_bget?map00240 map00240]
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** '''83''' reactions found over '''244''' reactions in the full pathway
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* [[map01110]]: [http://www.genome.jp/dbget-bin/www_bget?map01110 map01110]
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** '''218''' reactions found over '''1054''' reactions in the full pathway
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* [[map00230]]: [http://www.genome.jp/dbget-bin/www_bget?map00230 map00230]
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** '''98''' reactions found over '''298''' reactions in the full pathway
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* [[map00760]]: [http://www.genome.jp/dbget-bin/www_bget?map00760 map00760]
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** '''25''' reactions found over '''97''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[b_subtilis_subsp_subtilis_str168]]
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== External links  ==
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* BioCyc : META:RXN0-7092
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* MetaNetX (MNX) Equation : MNXR103048
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* KEGG Reaction : R02294
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* EC Number : 2.4.2
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=Purine nucleoside phosphorylase}}
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{{#set: gene associated=EF0186|EF0187}}
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{{#set: in pathway=map01100|map00240|map01110|map00230|map00760}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=b_subtilis_subsp_subtilis_str168}}
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Latest revision as of 15:47, 21 March 2018

 Common nameEc numberReconstruction categoryReconstruction toolReconstruction sourceReconstruction commentGene associatedIn pathway
ACGALpts manualManualManual-4 newreactionsManual curationEF2267OREF0628ANDEF3042OREF0628ANDEF3043OREF0628ANDEF3045OREF0628ANDEF0709ANDEF0710
ADPDS manualManualManual-4 newreactionsManual curationEF1134
AEPPT2 aminoethylphosphonate pyruvate transaminaseOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2994
AGAT LPL1 Acyl glycerol 3 phosphate acyltransferase Lb plantarum specificOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2691
AHMMPS LPL4 amino 5 hydroxymethyl 2 methylpyrimidine synthetaseOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF3255
ALALACD alanine D lactate ligase reversibleOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF0843
ALAt2pp copy1L-alanine transport in via proton symport (periplasm)Orthology
Manual
PantographOrthology-e coli sstr k12 substr mg1655
Manual-curation from orthology
EF1103
ASPt2pp copy1L-aspartate transport in via proton symport (periplasm)Orthology
Manual
PantographOrthology-e coli sstr k12 substr mg1655
Manual-curation from orthology
EF0387
Biomass LPL60ManualManual-1 new rxn for biomassReaction added for biomass, from model l.plantarum
CD2t3pppeManualManual-1 new rxn for biomassThis was a reaction occurring in the perisplasm of e. coliEF0859
CLPNS LPLCardiolipin Synthase LPL specificOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF1608
CLPNS140Cardiolipin synthase (n-C14:0)ManualManual-2 reaction to add deleteThis was a reaction occurring in the perisplasm of e. coliEF1608
EF0631
CLPNS141ppcManualManual-1 new rxn for biomassThis was a reaction occurring in the perisplasm of e. coliEF1608
EF0631
CLPNS161Cardiolipin synthase (n-C16:1)ManualManual-2 reaction to add deleteThis was a reaction occurring in the perisplasm of e. coliEF0631
EF1608
CLPNS180Cardiolipin synthase (n-C18:0)ManualManual-2 reaction to add deleteThis was a reaction occurring in the perisplasm of e. coliEF0631
EF1608
CO2tCO2 transporter via diffusionManualManual-2 reaction to add deleteReaction added for biomass
COBALT2abcpppeManualManual-1 new rxn for biomassThis was a reaction occurring in the perisplasm of e. coliEF1400
COBALT2t3pppeManualManual-1 new rxn for biomassThis was a reaction occurring in the perisplasm of e. coliEF0859
CPSS LPL2ManualManual-1 new rxn for biomassReaction added for biomass, from model l.plantarum
CRCTCTPD ribitol 5 phosphate cytidylyltransferaseOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2172
CYSTGL 1Cystathionine g lyaseOrthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF0290
CYSTS 2Cystathionine b synthaseOrthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF0289
CYSabc2pppeManualManual-1 new rxn for biomassThis was a reaction occurring in the perisplasm of e. coliEF2058
EF2059
CYTBDCytochrome oxidase bd (ubiquinol-8: 2 protons)ManualManual-2 reaction to add deleteThis was a reaction occurring in the perisplasm of e. coliEF2061
EF2060
DAGGT LPL1 2 diacylglycerol 3 glucosyltransferase LPL specificOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2891
EF2890
DAGK LPLDiacylglycerol kinase LPL specificOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2411
DALTALD Alanine lipoteichoic acid ligaseOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2749
EF2746
EF2748
EF2747
DARTALD Alanine ribitol teichoic acid ligaseOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2748
EF2746
EF2749
EF2747
DASYN LPLCDP Diacylglycerol synthetase LPL specificOrthology
Manual
PantographManual-curation from orthology
Orthology-l plantarum wcfs1
EF2494
DHFOR2Dihydrofolate reductaseOrthology
Manual
PantographManual-curation from orthology
Orthology-b subtilis subsp subtilis str168
EF1577
DNAS LPLManualManual-1 new rxn for biomassReaction added for biomass, from model l.plantarum
EX co2ManualManual-1 new rxn for biomassReaction added for biomass, from model l.plantarum
EX lac LManualManual-1 new rxn for biomassReaction added for biomass, from model l.plantarum
EX piManualManual-1 new rxn for biomassReaction added for biomass, from model l.plantarum
ExchangeSeed 4abzManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed adeManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed adocblManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed ala LManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed arg LManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed ascb LManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed asn LManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed asp LManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed btnManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed citManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed cys LManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed gln LManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed glu LManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed glyManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed guaManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed h2oManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
... further results